1892         const uint32_t is_phased = (linebuf_iter[1] == '|');  in VcfConvertPhasedBiallelicLine()  local
1893         const uint32_t is_haploid = (!is_phased) && (linebuf_iter[1] != '/');  in VcfConvertPhasedBiallelicLine()
1904                 if (is_phased && (cur_geno == 1)) {  in VcfConvertPhasedBiallelicLine()
1928                 if (is_phased && (halfcall_mode == kVcfHalfCallReference) && (cur_geno == 1)) {  in VcfConvertPhasedBiallelicLine()
1957             if (is_phased && (halfcall_mode == kVcfHalfCallReference) && (cur_geno == 1)) {  in VcfConvertPhasedBiallelicLine()
2028           const uint32_t is_phased = (linebuf_iter[1] == '|');  in VcfConvertPhasedMultiallelicLine()  local
2029           const uint32_t is_haploid = (!is_phased) && (linebuf_iter[1] != '/');  in VcfConvertPhasedMultiallelicLine()
2040                     if (is_phased && (cur_geno != second_allele_idx)) {  in VcfConvertPhasedMultiallelicLine()
2069                     if (is_phased && (halfcall_mode == kVcfHalfCallReference) && cur_geno) {  in VcfConvertPhasedMultiallelicLine()
2093                     if (is_phased && (cur_geno != second_allele_idx)) {  in VcfConvertPhasedMultiallelicLine()
2122                     if (is_phased) {  in VcfConvertPhasedMultiallelicLine()
2156               if (is_phased && (halfcall_mode == kVcfHalfCallReference) && cur_geno) {  in VcfConvertPhasedMultiallelicLine()
2212             const uint32_t is_phased = (next_digit == 76);  in VcfConvertPhasedMultiallelicLine()  local
2213             const uint32_t is_haploid = (!is_phased) && (next_digit != (~k0LU));  in VcfConvertPhasedMultiallelicLine()
2232                     if (is_phased && (cur_geno != second_allele_idx)) {  in VcfConvertPhasedMultiallelicLine()
2265                   if (is_phased && (halfcall_mode == kVcfHalfCallReference) && cur_geno) {  in VcfConvertPhasedMultiallelicLine()
2295                     if (is_phased && (cur_geno != second_allele_idx)) {  in VcfConvertPhasedMultiallelicLine()
2328                   if (is_phased) {  in VcfConvertPhasedMultiallelicLine()
10656         const uint32_t is_phased = probs_start[-2];  in Bgen13DosageOrPhaseScanThread()  local
10657         if (unlikely(is_phased > 1)) {  in Bgen13DosageOrPhaseScanThread()
10721           if (!is_phased) {  in Bgen13DosageOrPhaseScanThread()
10812         if (!is_phased) {  in Bgen13DosageOrPhaseScanThread()
11145         const uint32_t is_phased = probs_start[-2];  in Bgen13GenoToPgenThread()  local
11146         if (unlikely(is_phased > 1)) {  in Bgen13GenoToPgenThread()
11188             if (!is_phased) {  in Bgen13GenoToPgenThread()
11348           if (!is_phased) {  in Bgen13GenoToPgenThread()