Lines Matching refs:alleles_needed
182 uint32_t alleles_needed = 0; // bit 0 = ref, bit 1 = alt, bit 2 = ascii sort in VaridTemplateInit() local
204 alleles_needed += 2; // this happens twice in VaridTemplateInit()
210 alleles_needed += insert_type; in VaridTemplateInit()
222 vtp->alleles_needed = alleles_needed; in VaridTemplateInit()
231 const uint32_t alleles_needed = vtp->alleles_needed; in VaridTemplateApply() local
240 if (alleles_needed & 1) { in VaridTemplateApply()
250 if (alleles_needed > 1) { in VaridTemplateApply()
262 if (alleles_needed <= 3) { in VaridTemplateApply()
333 const uint32_t alleles_needed = vtp->alleles_needed; in VaridTemplateWrite() local
342 if (alleles_needed & 1) { in VaridTemplateWrite()
352 if (alleles_needed > 1) { in VaridTemplateWrite()
364 if (alleles_needed <= 3) { in VaridTemplateWrite()
419 return (max_allele_slen * vtp->alleles_needed + vtp->base_len + max_chr_slen + 10); in VaridWorstCaseSlen()