Lines Matching refs:StringIO

10 from io import StringIO
49         self.assertEqual(_label_line_parser(StringIO('abc\tucag')),
53             _label_line_parser(StringIO('abctucag'))
106             StringIO('CLUSTAL\n\nabc\tucag'),
107             StringIO('CLUSTAL\n\nabc\tuuu\ndef\tccc\n\n    ***\n\ndef ggg\nab'
109             StringIO('\n'.join(['CLUSTAL\n', 'abc uca', 'def ggg ccc'])),
110             StringIO('\n'.join(['CLUSTAL\n', 'abc uca ggg', 'def ggg ccc'])),
111             StringIO("""CLUSTAL
120             StringIO("""CLUSTAL
132             StringIO("""CLUSTAL W (1.82) multiple sequence alignment
148             StringIO("""CLUSTAL W (1.74) multiple sequence alignment
166         self.invalid_clustal_out = [StringIO('\n'.join(['dshfjsdfhdfsj',
168                                     StringIO('\n'.join(['hfsdjksdfhjsdf'])),
169                                     StringIO('\n'.join(['dshfjsdfhdfsj',
172                                     StringIO('\n'.join(['dshfjsdfhdfsj',
175                                     StringIO('\n'.join(['dshfj\tdfhdfsj',
177                                     StringIO('\n'.join(['dshfjsdfhdfsj',
179                                     StringIO("""CLUSTAL W (1.74) multiple sequence alignment
186                                     StringIO("""CLUSTAL W (1.74) multiple sequence alignment
196                                     StringIO("""CLUSTAL W (1.74) multiple sequence alignment
207                                     StringIO("""CLUSTAL W (1.74) multiple sequence alignment
215                                     StringIO("""CLUSTAL W (1.74) multiple sequence alignment
234         result = _clustal_to_tabular_msa(StringIO(),
239         BAD = StringIO('\n'.join(['dshfjsdfhdfsj', 'hfsdjksdfhjsdf']))
248             with StringIO() as fh:
270         self.assertEqual(_clustal_sniffer(StringIO()), (False, {}))
281             with StringIO() as fh:
285         fh = StringIO(