Lines Matching refs:TSeqV

807 template <typename TTraceSet, typename TScoutState, typename TSeed, typename TSeqH, typename TSeqV,
816                        TSeqV const & seqV,  in _initializeBandedChain()
822     typedef typename Infix<TSeqV const>::Type TInfixV;  in _initializeBandedChain()
968 …mplate <typename TTraceSet, typename TDPScoutState, typename TSeed, typename TSeqH, typename TSeqV,
977                 TSeqV const & seqV,  in _computeGapArea()
982     typedef typename Infix<TSeqV const>::Type TInfixV;  in _computeGapArea()
984     typedef typename Position<TSeqV>::Type TPosV;  in _computeGapArea()
1030 …mplate <typename TTraceSet, typename TDPScoutState, typename TSeed, typename TSeqH, typename TSeqV,
1039                    TSeqV const & seqV,  in _computeAnchorArea()
1044     typedef typename Infix<TSeqV const>::Type TInfixV;  in _computeAnchorArea()
1103 …mplate <typename TTraceSet, typename TDPScoutState, typename TSeed, typename TSeqH, typename TSeqV,
1112                    TSeqV const & seqV,  in _finishBandedChain()
1124     typedef typename Infix<TSeqV const>::Type TInfixV;  in _finishBandedChain()