seqan/index/index_wotd.h

209         TSize            sentinelOcc;  variable
235             sentinelOcc(other.sentinelOcc),  in Index()
246             sentinelOcc(other.sentinelOcc),  in Index()
253             sentinelOcc(0),  in Index()
260             sentinelOcc(0),  in Index()
1201         index.sentinelOcc = 0;
1254         index.sentinelOcc = 0;
1295         index.sentinelOcc =
1303             if (index.sentinelOcc != 0)
1304 …       requiredSize = (index.sentinelOcc > 1)? 2: 1;    // insert *one* $-edge for all $_i suffices
1306 …          requiredSize = index.sentinelOcc;                    // insert each $_i suffix one-by-one
1308         requiredSize += _wotdCummulativeSum(bound, occ, left + index.sentinelOcc);
1346                 if (index.sentinelOcc != 0) {
1348                     *itOcc = index.sentinelOcc;
1350                     index.sentinelOcc = lpBucketOcc;
1357                 if (index.sentinelOcc != 0) {
1359                     TSize swap = index.sentinelOcc;
1360                     index.sentinelOcc = occ[0];
1409         index.sentinelOcc = _wotdCountChars(occ, text, tempSA, prefixLen);
1414             if (index.sentinelOcc != 0)
1415 …       requiredSize = (index.sentinelOcc > 1)? 2: 1;    // insert *one* $-edge for all $_i suffices
1417 …          requiredSize = index.sentinelOcc;                    // insert each $_i suffix one-by-one
1419         requiredSize += _wotdCummulativeSum(bound, occ, left + index.sentinelOcc);
1478         index.sentinelOcc = _wotdCountChars(occ, stringSet, tempSA, prefixLen);
1483             if (index.sentinelOcc != 0)
1484 …       requiredSize = (index.sentinelOcc > 1)? 2: 1;    // insert *one* $-edge for all $_i suffices
1486 …          requiredSize = index.sentinelOcc;                    // insert each $_i suffix one-by-one
1488         requiredSize += _wotdCummulativeSum(bound, occ, left + index.sentinelOcc);
1687         if (index.sentinelOcc != 0)
1689             if (index.sentinelOcc > 1 && index.interSentinelNodes)    // occurs on multiseqs
1692                 *itDir = index.sentinelBound - index.sentinelOcc;    ++itDir;
1695 …          for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
1747         if (index.sentinelOcc != 0)
1749             if (index.sentinelOcc > 1 && index.interSentinelNodes)    // occurs on multiseqs
1752                 *itDir = index.sentinelBound - index.sentinelOcc;    ++itDir;
1755 …          for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
1812             if (index.sentinelOcc > 0)
1814                 TSize sentinelSize = index.sentinelOcc;
1820             assert(!(index.sentinelOcc == 1 && size == 1));
1864             if (index.sentinelOcc > 0)
1866                 TSize sentinelSize = index.sentinelOcc;
2008             if (index.sentinelOcc > 0)
2010                 TSize sentinelSize = index.sentinelOcc;