Lines Matching refs:readNo
831 unsigned readNo = -1;
843 gseqNo == (*it).gseqNo && readNo == (*it).rseqNo)
848 readNo = (*it).rseqNo;
874 if (gBegin == (*it).gBegin && readNo == (*it).rseqNo &&
880 readNo = (*it).rseqNo;
905 unsigned readNo = -1;
913 if (readNo == (*it).rseqNo && editDist == (*it).editDist)
917 if (readNo != (unsigned)-1 && (unsigned)editDist < length(cnt))
918 cnt[editDist][readNo] = (maxVal < count)? maxVal : count;
919 readNo = (*it).rseqNo;
924 if (readNo != (unsigned)-1 && (unsigned)editDist < length(cnt))
925 cnt[editDist][readNo] = count;
940 setMaxErrors(TSwift &swift, TReadNo readNo, TMaxErrors maxErrors)
942 int minT = _qgramLemma(swift, readNo, maxErrors);
947 setMinThreshold(swift, readNo, (unsigned)minT);
984 unsigned readNo = -1;
1003 if (readNo == (*it).rseqNo
1023 setMaxErrors(swift, readNo, maxErrors);
1045 readNo = (*it).rseqNo;
1081 unsigned readNo = -1;
1092 if (readNo == (*it).rseqNo)
1120 readNo = (*it).rseqNo;
1153 unsigned readNo = -1;
1166 if (readNo == (*it).rseqNo)
1179 readNo = (*it).rseqNo;