Lines Matching refs:readNo
190 unsigned readNo = -1; in compactSplicedMatches() local
208 if (readNo == (*it).rseqNo) in compactSplicedMatches()
225 setMaxErrors(swiftL, readNo, maxErrors); in compactSplicedMatches()
226 setMaxErrors(swiftR, readNo, maxErrors); in compactSplicedMatches()
229 ::std::cerr << "(read #" << readNo << " disabled)"; in compactSplicedMatches()
249 readNo = (*it).rseqNo;// >> 1; in compactSplicedMatches()
271 unsigned readNo = -1; in compactSplicedMatchesPurgeAmbiguous() local
289 if (readNo == (*it).rseqNo) in compactSplicedMatchesPurgeAmbiguous()
306 readNo = (*it).rseqNo; in compactSplicedMatchesPurgeAmbiguous()
355 unsigned readNo = -1; in countSplitMatches() local
363 if (readNo == (*it).rseqNo && in countSplitMatches()
368 if (readNo != (unsigned)-1 && (unsigned)editDist < length(cnt)) in countSplitMatches()
369 cnt[editDist][readNo] = (maxVal < count)? maxVal : count; in countSplitMatches()
370 readNo = (*it).rseqNo; in countSplitMatches()
375 if (readNo != (unsigned)-1 && (unsigned)editDist < length(cnt)) in countSplitMatches()
376 cnt[editDist][readNo] = count; in countSplitMatches()