Lines Matching refs:TContigPos
178 typedef typename TFragmentStore::TContigPos TContigPos; in getErrorDistribution() typedef
184 TContigPos left, right; in getErrorDistribution()
221 typedef typename TFragmentStore::TContigPos TContigPos; in getErrorDistribution() typedef
245 TContigPos left = (*it).beginPos; in getErrorDistribution()
246 TContigPos right = (*it).endPos; in getErrorDistribution()
548 typedef typename TFragmentStore::TContigPos TContigPos; in dumpMatches() typedef
554 typedef typename TFragmentStore::TContigPos TGPos; in dumpMatches()
770 TContigPos left = (*it).beginPos; in dumpMatches()
771 TContigPos right = (*it).endPos; in dumpMatches()
920 TContigPos left = (*it).beginPos; in dumpMatches()
921 TContigPos right = (*it).endPos; in dumpMatches()
1075 TContigPos left = (*it).beginPos; in dumpMatches()
1076 TContigPos right = (*it).endPos; in dumpMatches()
1115 TContigPos left = (*it).beginPos; in dumpMatches()
1116 TContigPos right = (*it).endPos; in dumpMatches()