Lines Matching refs:_streamEOF
190 if (_streamEOF(file)) return; in qualityDistributionFromPrbFile()
199 while (!_streamEOF(file)) in qualityDistributionFromPrbFile()
202 for (unsigned pos = 0; (!_streamEOF(file)) && (pos < pm_options.totalN); ++pos) in qualityDistributionFromPrbFile()
264 if (_streamEOF(file)) return; in qualityDistributionFromFastQFile()
269 while (!_streamEOF(file)) in qualityDistributionFromFastQFile()
272 if (_streamEOF(file) || c != '+') continue; in qualityDistributionFromFastQFile()
277 while (!(_streamEOF(file) || c == '\n' || c == '\r')) in qualityDistributionFromFastQFile()
307 if (_streamEOF(file)) return; in qualityDistributionFromFastQIntFile()
312 while (!_streamEOF(file)) in qualityDistributionFromFastQIntFile()
315 if (_streamEOF(file) || c != '+') continue; in qualityDistributionFromFastQIntFile()
320 while (!(_streamEOF(file) || c == '\n' || c == '\r')) in qualityDistributionFromFastQIntFile()
453 if (_streamEOF(file)) return 0; in parseShapesFromFile()
458 while (!_streamEOF(file)) in parseShapesFromFile()
827 while (!_streamEOF(file)) { in _parse_readShape()
885 if(_streamEOF(file)) in parseGappedParams()
897 while(!_streamEOF(file)) in parseGappedParams()
1119 while(!_streamEOF(file) && count < pm_options.totalN) in chooseParams()