Lines Matching refs:readNo
873 setMaxErrors(TSwift &swift, TReadNo readNo, TMaxErrors maxErrors)
875 int minT = _qgramLemma(swift, readNo, maxErrors);
880 setMinThreshold(swift, readNo, (unsigned)minT);
917 unsigned readNo = -1;
936 if (readNo == (*it).readId && (*it).pairMatchId == TAlignedRead::INVALID_ID)
952 setMaxErrors(swift, readNo, maxErrors);
955 ::std::cerr << "(read #" << readNo << " disabled)";
974 readNo = (*it).readId;
1005 unsigned readNo = -1;
1016 if (readNo == (*it).readId)
1044 readNo = (*it).readId;
1077 unsigned readNo = -1;
1090 if (readNo == (*it).readId)
1103 readNo = (*it).readId;