47 …  inputMsa = alnExporter.getAlignment(settings.msaRef.dbiRef, settings.msaRef.entityId, stateInfo);  in SimpleAddToAlignmentTask()
74     U2UseCommonUserModStep modStep(settings.msaRef, stateInfo);  in report()
75     CHECK_OP(stateInfo, ReportResult_Finished);  in report()
80     U2AlphabetId currentAlphabetId = dbi->getMsaAlphabet(settings.msaRef.entityId, stateInfo);  in report()
81     CHECK_OP(stateInfo, ReportResult_Finished);  in report()
85         dbi->updateMsaAlphabet(settings.msaRef.entityId, settings.alphabet, stateInfo);  in report()
86         CHECK_OP(stateInfo, ReportResult_Finished);  in report()
93         U2MsaRow row = dbi->getRow(settings.msaRef.entityId, rowsIds[i], stateInfo);  in report()
94         CHECK_OP(stateInfo, ReportResult_Finished);  in report()
100         MaDbiUtils::updateRowGapModel(settings.msaRef, rowsIds[i], msaGapModel[i], stateInfo);  in report()
101         CHECK_OP(stateInfo, ReportResult_Finished);  in report()
108         U2MsaRow row = MSAUtils::copyRowFromSequence(&seqObject, settings.msaRef.dbiRef, stateInfo);  in report()
109         CHECK_OP(stateInfo, ReportResult_Finished);  in report()
113             dbi->addRow(settings.msaRef.entityId, posInMsa, row, stateInfo);  in report()
114             CHECK_OP(stateInfo, ReportResult_Finished);  in report()
120                 U2MsaRow msaRow = dbi->getRow(settings.msaRef.entityId, row.rowId, stateInfo);  in report()
121                 CHECK_OP(stateInfo, ReportResult_Finished);  in report()
125 …                  dbi->updateGapModel(settings.msaRef.entityId, msaRow.rowId, gapModel, stateInfo);  in report()
126                     CHECK_OP(stateInfo, ReportResult_Finished);  in report()
136 …stateInfo.addWarning(tr("The following sequence(s) were not aligned as they do not contain meaning…  in report()
141         MsaDbiUtils::trim(settings.msaRef, stateInfo);  in report()
143     CHECK_OP(stateInfo, ReportResult_Finished);  in report()
157     QByteArray sequence = dnaSeq.getWholeSequenceData(stateInfo);  in run()
159     CHECK_OP(stateInfo, );  in run()
176             stateInfo.setProgress(100 * p / iterationsNum);  in run()
188             stateInfo.setProgress(100 * processedRows / nSeq);  in run()