Lines Matching refs:assemblyId

115     virtual qint64 countReads(const U2DataId &assemblyId, const U2Region &r, U2OpStatus &os) = 0;
123 …virtual U2DbiIterator<U2AssemblyRead> *getReads(const U2DataId &assemblyId, const U2Region &r, U2O…
131 …virtual U2DbiIterator<U2AssemblyRead> *getReadsByRow(const U2DataId &assemblyId, const U2Region &r…
139 …virtual U2DbiIterator<U2AssemblyRead> *getReadsByName(const U2DataId &assemblyId, const QByteArray…
146 … virtual qint64 getMaxPackedRow(const U2DataId &assemblyId, const U2Region &r, U2OpStatus &os) = 0;
152     virtual qint64 getMaxEndPos(const U2DataId &assemblyId, U2OpStatus &os) = 0;
179     virtual void removeAssemblyData(const U2DataId &assemblyId, U2OpStatus &os) = 0;
194 …virtual void removeReads(const U2DataId &assemblyId, const QList<U2DataId> &readIds, U2OpStatus &o…
202 …virtual void addReads(const U2DataId &assemblyId, U2DbiIterator<U2AssemblyRead> *it, U2OpStatus &o…
210     virtual void pack(const U2DataId &assemblyId, U2AssemblyPackStat &stats, U2OpStatus &os) = 0;
219 …virtual void calculateCoverage(const U2DataId &assemblyId, const U2Region &region, U2AssemblyCover…