Lines Matching defs:assemblyId

71 AssemblyAdapter *SQLiteAssemblyDbi::getAdapter(const U2DataId &assemblyId, U2OpStatus &os) {  in getAdapter()
103 U2Assembly SQLiteAssemblyDbi::getAssemblyObject(const U2DataId &assemblyId, U2OpStatus &os) {  in getAssemblyObject()
125 qint64 SQLiteAssemblyDbi::countReads(const U2DataId &assemblyId, const U2Region &r, U2OpStatus &os)…  in countReads()
134 U2DbiIterator<U2AssemblyRead> *SQLiteAssemblyDbi::getReads(const U2DataId &assemblyId, const U2Regi…  in getReads()
143 U2DbiIterator<U2AssemblyRead> *SQLiteAssemblyDbi::getReadsByRow(const U2DataId &assemblyId, const U…  in getReadsByRow()
161 U2DbiIterator<U2AssemblyRead> *SQLiteAssemblyDbi::getReadsByName(const U2DataId &assemblyId, const …  in getReadsByName()
170 qint64 SQLiteAssemblyDbi::getMaxPackedRow(const U2DataId &assemblyId, const U2Region &r, U2OpStatus…  in getMaxPackedRow()
184 qint64 SQLiteAssemblyDbi::getMaxEndPos(const U2DataId &assemblyId, U2OpStatus &os) {  in getMaxEndPos()
237 void SQLiteAssemblyDbi::removeAssemblyData(const U2DataId &assemblyId, U2OpStatus &os) {  in removeAssemblyData()
262 void SQLiteAssemblyDbi::removeReads(const U2DataId &assemblyId, const QList<U2DataId> &rowIds, U2Op…  in removeReads()
291 void SQLiteAssemblyDbi::removeTables(const U2DataId &assemblyId, U2OpStatus &os) {  in removeTables()
297 void SQLiteAssemblyDbi::removeAssemblyEntry(const U2DataId &assemblyId, U2OpStatus &os) {  in removeAssemblyEntry()
305 void SQLiteAssemblyDbi::addReads(const U2DataId &assemblyId, U2DbiIterator<U2AssemblyRead> *it, U2O…  in addReads()
314 void SQLiteAssemblyDbi::pack(const U2DataId &assemblyId, U2AssemblyPackStat &stat, U2OpStatus &os) {  in pack()
328 void SQLiteAssemblyDbi::calculateCoverage(const U2DataId &assemblyId, const U2Region &region, U2Ass…  in calculateCoverage()