92         stateInfo.setDescription(LoadInfoTask::tr("Converting SAM to BAM"));  in run()
95         CHECK_OP(stateInfo, );  in run()
98         BAMUtils::convertToSamOrBam(sourceURL, bamUrl, options, stateInfo);  in run()
99         CHECK_OP(stateInfo, );  in run()
101     stateInfo.setProgress(33);  in run()
103     bool sorted = BAMUtils::isSortedBam(bamUrl, stateInfo);  in run()
104     CHECK_OP(stateInfo, );  in run()
112         stateInfo.setDescription(LoadInfoTask::tr("Sorting BAM"));  in run()
114         sortedBamUrl = BAMUtils::sortBam(bamUrl, getSortedBamUrl(bamUrl), stateInfo).getURLString();  in run()
115         CHECK_OP(stateInfo, );  in run()
117     stateInfo.setProgress(66);  in run()
129             stateInfo.setDescription(LoadInfoTask::tr("Coping sorted BAM"));  in run()
134         stateInfo.setDescription(LoadInfoTask::tr("Creating BAM index"));  in run()
136         BAMUtils::createBamIndex(indexedBamUrl, stateInfo);  in run()
137         CHECK_OP(stateInfo, );  in run()
139     stateInfo.setProgress(100);  in run()