Lines Matching refs:freqc
65 double xi, xv, ttratio, ttratio0, freqa, freqc, freqg, freqt, freqr, freqy, variable
848 freqc = 0.25; in dnadist_empiricalfreqs()
860 sum += freqc * nodep[i]->x[j][0][(long)C - (long)A]; in dnadist_empiricalfreqs()
864 sumc += w * freqc * nodep[i]->x[j][0][(long)C - (long)A] / sum; in dnadist_empiricalfreqs()
871 freqc = sumc / sum; in dnadist_empiricalfreqs()
885 freqc = 0.25; in getinput()
889 getbasefreqs(freqa, freqc, freqg, freqt, &freqr, &freqy, &freqar, &freqcy, in getinput()
894 freqc = 0.999999*freqc; in getinput()
898 if (freqc < 0.00000001) { in getinput()
900 freqc = 0.000001; in getinput()
906 freqc = 0.999999*freqc; in getinput()
912 freqc = 0.999999*freqc; in getinput()
923 getbasefreqs(freqa, freqc, freqg, freqt, &freqr, &freqy, &freqar, &freqcy, in getinput()
1148 xx1freqc = xx1[(long)C - (long)A] * freqc; in makev()
1152 sum2 = freqa * xx2[0] + freqc * xx2[(long)C - (long)A] + in makev()