src/cpp/bcf_entry.h

31 …void parse_genotype_entry(unsigned int indv, bool GT=false, bool GQ=false, bool DP=false, bool FT=…
39 …void set_indv_GENOTYPE_and_PHASE(unsigned int indv, const pair<string, string> &genotype, char pha…
40 	void set_indv_GENOTYPE_and_PHASE(unsigned int indv, const pair<int, int> &genotype, char phase);
41 …void set_indv_GENOTYPE_and_PHASE(unsigned int indv, const unsigned int &pos, const unsigned int &s…
42 	void set_indv_GENOTYPE_ids(unsigned int indv, const pair<int, int> &in);
43 	void set_indv_GQUALITY(unsigned int indv, const vector<char> &in);
44 	void set_indv_GQUALITY(unsigned int indv, const float &in);
45 	void set_indv_GFILTER(unsigned int indv, const string &in);
46 	void set_indv_GFILTER(unsigned int indv, const vector<char> &in);
47 	void set_indv_PHASE(unsigned int indv, char in);
48 	void set_indv_GENOTYPE_alleles(unsigned int indv, const pair<int, int> &in);
52 	void read_indv_generic_entry(unsigned int indv, const string &FORMAT_id, string &out);
53 	void read_indv_generic_entry(unsigned int indv, const int &idx, string &out);