Lines Matching refs:indv
35 …virtual void parse_genotype_entry(unsigned int indv, bool GT=false, bool GQ=false, bool DP=false, …
84 void get_indv_GENOTYPE_ids(unsigned int indv, pair<int, int> &out) const;
85 void get_indv_GENOTYPE_strings(unsigned int indv, pair<string, string> &out) const;
86 char get_indv_PHASE(unsigned int indv) const;
87 double get_indv_GQUALITY(unsigned int indv) const;
88 int get_indv_DEPTH(unsigned int indv) const;
89 void get_indv_GFILTER(unsigned int indv, string &out) const;
90 void get_indv_GFILTER_vector(unsigned int indv, vector<string> &out) const;
91 int get_indv_ploidy(unsigned int indv) const;
96 virtual void read_indv_generic_entry(unsigned int indv, const string &FORMAT_id, string &out) = 0;
206 void set_indv_DEPTH(unsigned int indv, int in);