287 void entry::get_indv_GENOTYPE_strings(unsigned int indv, pair<string, string> &out) const  in get_indv_GENOTYPE_strings()  argument
289 	assert(parsed_GT[indv] == true);  in get_indv_GENOTYPE_strings()
293 	get_allele(GENOTYPE[indv].first, out_allele1);  in get_indv_GENOTYPE_strings()
294 	get_allele(GENOTYPE[indv].second, out_allele2);  in get_indv_GENOTYPE_strings()
298 void entry::get_indv_GENOTYPE_ids(unsigned int indv, pair<int, int> &out) const  in get_indv_GENOTYPE_ids()  argument
300 	assert(parsed_GT[indv] == true);  in get_indv_GENOTYPE_ids()
301 	out = GENOTYPE[indv];  in get_indv_GENOTYPE_ids()
304 char entry::get_indv_PHASE(unsigned int indv) const  in get_indv_PHASE()
306 	assert(parsed_GT[indv] == true);  in get_indv_PHASE()
307 	return PHASE[indv];  in get_indv_PHASE()
310 int entry::get_indv_DEPTH(unsigned int indv) const  in get_indv_DEPTH()
312 	assert(parsed_DP[indv] == true);  in get_indv_DEPTH()
315 	return DEPTH[indv];  in get_indv_DEPTH()
318 double entry::get_indv_GQUALITY(unsigned int indv) const  in get_indv_GQUALITY()
320 	assert(parsed_GQ[indv] == true);  in get_indv_GQUALITY()
323 	return GQUALITY[indv];  in get_indv_GQUALITY()
326 void entry::get_indv_GFILTER_vector(unsigned int indv, vector<string> &out) const  in get_indv_GFILTER_vector()  argument
328 	assert(parsed_FT[indv] == true);  in get_indv_GFILTER_vector()
330 		out = GFILTER[indv];  in get_indv_GFILTER_vector()
335 void entry::get_indv_GFILTER(unsigned int indv, string &out) const  in get_indv_GFILTER()  argument
337 	assert(parsed_FT[indv] == true);  in get_indv_GFILTER()
339 	if ((!GFILTER.empty()) && (GFILTER[indv].size()>0))  in get_indv_GFILTER()
342 		for (unsigned int ui=0; ui<GFILTER[indv].size(); ui++)  in get_indv_GFILTER()
346 			out += GFILTER[indv][ui];  in get_indv_GFILTER()
353 int entry::get_indv_ploidy(unsigned int indv) const  in get_indv_ploidy()
355 	assert (parsed_GT[indv]==true);  in get_indv_ploidy()
356 	return ploidy[indv];  in get_indv_ploidy()