1185 	map<string, int> chr_to_idx;  in output_haplotype_count()  local
1196 		if (chr_to_idx.find(CHROM) == chr_to_idx.end())  in output_haplotype_count()
1199 			chr_to_idx[CHROM] = (N_chr-1);  in output_haplotype_count()
1203 		idx = chr_to_idx[CHROM];  in output_haplotype_count()
1261 		if (chr_to_idx.find(CHROM) == chr_to_idx.end())  in output_haplotype_count()
1264 		idx = chr_to_idx[CHROM];  in output_haplotype_count()
2255 	map<string, int> chr_to_idx;  in output_haplotype_r2_of_SNP_list_vs_all_others()  local
2280 		if (chr_to_idx.find(CHROM) == chr_to_idx.end())  in output_haplotype_r2_of_SNP_list_vs_all_others()
2283 			chr_to_idx[CHROM] = (N_chr-1);  in output_haplotype_r2_of_SNP_list_vs_all_others()
2287 		idx = chr_to_idx[CHROM];  in output_haplotype_r2_of_SNP_list_vs_all_others()
2363 		if ( chr_to_idx.find(CHROM) != chr_to_idx.end() )  in output_haplotype_r2_of_SNP_list_vs_all_others()
2364 			if ( keep_positions[ chr_to_idx[CHROM] ].find(POS) != keep_positions[ chr_to_idx[CHROM] ].end() )  in output_haplotype_r2_of_SNP_list_vs_all_others()
2496 	map<string, int> chr_to_idx;  in output_genotype_r2_of_SNP_list_vs_all_others()  local
2522 		if (chr_to_idx.find(CHROM) == chr_to_idx.end())  in output_genotype_r2_of_SNP_list_vs_all_others()
2525 			chr_to_idx[CHROM] = (N_chr-1);  in output_genotype_r2_of_SNP_list_vs_all_others()
2529 		idx = chr_to_idx[CHROM];  in output_genotype_r2_of_SNP_list_vs_all_others()
2604 		if ( chr_to_idx.find(CHROM) != chr_to_idx.end() )  in output_genotype_r2_of_SNP_list_vs_all_others()
2605 			if ( keep_positions[ chr_to_idx[CHROM] ].find(POS) != keep_positions[ chr_to_idx[CHROM] ].end() )  in output_genotype_r2_of_SNP_list_vs_all_others()