modules/pymol/editor.py

18 tmp_connect = _prefix + "_con"  variable
125     elif _self.select(tmp_connect,"(%s) & elem N,C"%selection) != 1:
129     elif amino_acid in ["nhh","nme"] and _self.select(tmp_connect,"(%s) & elem C"%selection) != 1:
133     elif amino_acid in ["ace"] and _self.select(tmp_connect,"(%s) & elem N"%selection) != 1:
154         if _self.count_atoms("elem N",domain=tmp_connect):
156             _self.iterate(tmp_connect,"tmp[0]=resv", space={ 'tmp' : tmp })
159             _self.set_geometry(tmp_connect, 3, 3) # make nitrogen planar
160             _self.fuse("(%s and name C)"%(tmp_editor),tmp_connect,2)
201             sele = ("(name N & (byres nbr. %s) &! (byres %s))"% (tmp_connect,tmp_connect))
206         elif _self.count_atoms("elem C",domain=tmp_connect): # forward
208             _self.iterate(tmp_connect,"tmp[0]=resv", space={ 'tmp' : tmp })
212             _self.fuse("(%s and name N)"%tmp_editor,tmp_connect,2)
253             sele = ("(name C & (byres nbr. %s) & !(byres %s))"% (tmp_connect,tmp_connect))