/*
 * This file was automatically generated by EvoSuite
 * Fri Jan 12 12:39:39 GMT 2018
 */

package uk.ac.sanger.artemis.components.genebuilder;

import org.junit.Test;
import static org.junit.Assert.*;
import static org.evosuite.runtime.EvoAssertions.*;
import java.awt.datatransfer.Clipboard;
import java.awt.event.MouseEvent;
import java.io.IOException;
import java.util.List;
import javax.swing.DebugGraphics;
import org.apache.batik.dom.GenericDOMImplementation;
import org.apache.batik.dom.GenericDocument;
import org.apache.batik.dom.GenericDocumentType;
import org.apache.batik.svggen.DefaultExtensionHandler;
import org.apache.batik.svggen.DefaultImageHandler;
import org.apache.batik.svggen.ImageHandlerBase64Encoder;
import org.apache.batik.svggen.SVGGeneratorContext;
import org.apache.batik.svggen.SVGGraphics2D;
import org.biojava.bio.seq.NewSimpleAssembly;
import org.evosuite.runtime.EvoRunner;
import org.evosuite.runtime.EvoRunnerParameters;
import org.junit.runner.RunWith;
import org.w3c.dom.DOMImplementation;
import uk.ac.sanger.artemis.FeatureVector;
import uk.ac.sanger.artemis.Selection;
import uk.ac.sanger.artemis.chado.ClusterLazyQualifierValue;
import uk.ac.sanger.artemis.components.genebuilder.ProteinMapPanel;
import uk.ac.sanger.artemis.io.BlastEntryInformation;
import uk.ac.sanger.artemis.io.ChadoCanonicalGene;
import uk.ac.sanger.artemis.io.Feature;
import uk.ac.sanger.artemis.io.GFFStreamFeature;
import uk.ac.sanger.artemis.io.GenbankStreamFeature;
import uk.ac.sanger.artemis.io.IndexedGFFDocumentEntry;
import uk.ac.sanger.artemis.io.Key;
import uk.ac.sanger.artemis.io.Qualifier;
import uk.ac.sanger.artemis.io.QualifierLazyLoading;
import uk.ac.sanger.artemis.io.QualifierVector;
import uk.ac.sanger.artemis.util.Document;
import uk.ac.sanger.artemis.util.StringVector;

@RunWith(EvoRunner.class) @EvoRunnerParameters(mockJVMNonDeterminism = true, useVFS = true, useVNET = true, resetStaticState = true, separateClassLoader = true, useJEE = true) 
public class ProteinMapPanel_ESTest extends ProteinMapPanel_ESTest_scaffolding {

  @Test(timeout = 4000)
  public void test00()  throws Throwable  {
      ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
      chadoCanonicalGene0.setSrcfeature_id(0);
      chadoCanonicalGene0.getTranscriptFeatureFromName("R");
      Clipboard clipboard0 = new Clipboard("R");
      Selection selection0 = new Selection(clipboard0);
      ProteinMapPanel proteinMapPanel0 = new ProteinMapPanel((Feature) null, chadoCanonicalGene0, selection0);
      // Undeclared exception!
      try { 
        proteinMapPanel0.getToolTipText((MouseEvent) null);
        fail("Expecting exception: NullPointerException");
      
      } catch(NullPointerException e) {
         //
         // no message in exception (getMessage() returned null)
         //
         verifyException("uk.ac.sanger.artemis.components.genebuilder.ProteinMapPanel", e);
      }
  }

  @Test(timeout = 4000)
  public void test01()  throws Throwable  {
      GenbankStreamFeature genbankStreamFeature0 = new GenbankStreamFeature();
      ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
      Clipboard clipboard0 = new Clipboard("Filter minimum score must be less than maximum score");
      Selection selection0 = new Selection(clipboard0);
      ProteinMapPanel proteinMapPanel0 = new ProteinMapPanel(genbankStreamFeature0, chadoCanonicalGene0, selection0);
      selection0.getAllSegments();
      MouseEvent mouseEvent0 = new MouseEvent(proteinMapPanel0, 4, 4, 4, 4, (-678), 4, true);
      MouseEvent.getMouseModifiersText(58);
      proteinMapPanel0.getToolTipText(mouseEvent0);
      GenericDocumentType genericDocumentType0 = new GenericDocumentType(")Q5S0sxmu!^O", "", (String) null);
      GenericDocument genericDocument0 = new GenericDocument(genericDocumentType0, (DOMImplementation) null);
      SVGGeneratorContext sVGGeneratorContext0 = SVGGeneratorContext.createDefault(genericDocument0);
      SVGGraphics2D sVGGraphics2D0 = new SVGGraphics2D(sVGGeneratorContext0, true);
      SVGGraphics2D sVGGraphics2D1 = new SVGGraphics2D(sVGGraphics2D0);
      proteinMapPanel0.drawPrediction(genbankStreamFeature0, sVGGraphics2D1, 0, 0, 1406, 1368, (String[]) null);
      assertFalse(proteinMapPanel0.isFocusCycleRoot());
  }

  @Test(timeout = 4000)
  public void test02()  throws Throwable  {
      BlastEntryInformation blastEntryInformation0 = new BlastEntryInformation();
      Key key0 = Key.CDS;
      blastEntryInformation0.getValidQualifierNames(key0);
      Qualifier qualifier0 = new Qualifier("61pi", (StringVector) null);
      ProteinMapPanel.isProteinMapElement(qualifier0);
      ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
      chadoCanonicalGene0.getTranscriptFeatureFromName("61pi");
      Clipboard clipboard0 = new Clipboard("61pi");
      Selection selection0 = new Selection(clipboard0);
      ProteinMapPanel proteinMapPanel0 = new ProteinMapPanel((Feature) null, chadoCanonicalGene0, selection0);
      GenericDocumentType genericDocumentType0 = new GenericDocumentType("polypeptide_domain", "polypeptide_domain", "Xw`Mme {~* 3zo;P|74");
      GenericDOMImplementation genericDOMImplementation0 = new GenericDOMImplementation();
      GenericDocument genericDocument0 = new GenericDocument(genericDocumentType0, genericDOMImplementation0);
      SVGGraphics2D sVGGraphics2D0 = new SVGGraphics2D(genericDocument0);
      QualifierLazyLoading qualifierLazyLoading0 = new QualifierLazyLoading("", (List) null);
      // Undeclared exception!
      try { 
        proteinMapPanel0.drawGPIArrow(sVGGraphics2D0, qualifierLazyLoading0, (short)4, (short)8, 1048576, (short)1);
        fail("Expecting exception: NullPointerException");
      
      } catch(NullPointerException e) {
         //
         // no message in exception (getMessage() returned null)
         //
         verifyException("uk.ac.sanger.artemis.components.genebuilder.ProteinMapPanel", e);
      }
  }

  @Test(timeout = 4000)
  public void test03()  throws Throwable  {
      GenbankStreamFeature genbankStreamFeature0 = new GenbankStreamFeature();
      ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
      Clipboard clipboard0 = new Clipboard("");
      Selection selection0 = new Selection(clipboard0);
      ProteinMapPanel proteinMapPanel0 = new ProteinMapPanel(genbankStreamFeature0, chadoCanonicalGene0, selection0);
      GenericDocumentType genericDocumentType0 = new GenericDocumentType("polypeptide_domain", "", "");
      GenericDocument genericDocument0 = new GenericDocument(genericDocumentType0, (DOMImplementation) null);
      SVGGeneratorContext sVGGeneratorContext0 = SVGGeneratorContext.createDefault(genericDocument0);
      SVGGraphics2D sVGGraphics2D0 = new SVGGraphics2D(sVGGeneratorContext0, true);
      SVGGraphics2D sVGGraphics2D1 = new SVGGraphics2D(sVGGraphics2D0);
      String[] stringArray0 = new String[9];
      stringArray0[0] = "polypeptide_domain";
      stringArray0[1] = "";
      stringArray0[2] = "ISO-8859-1";
      stringArray0[3] = "ISO-8859-1";
      stringArray0[4] = "ISO-8859-1";
      stringArray0[5] = "ISO-8859-1";
      stringArray0[6] = "/~Isj|R'Cxl";
      stringArray0[7] = "";
      stringArray0[8] = "ISO-8859-1";
      proteinMapPanel0.drawPrediction(genbankStreamFeature0, sVGGraphics2D1, (short)4, 3, 3, 583, stringArray0);
      assertEquals(3, SVGGraphics2D.DEFAULT_MAX_GC_OVERRIDES);
  }

  @Test(timeout = 4000)
  public void test04()  throws Throwable  {
      ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
      ProteinMapPanel proteinMapPanel0 = new ProteinMapPanel((Feature) null, chadoCanonicalGene0, (Selection) null);
      GenericDocumentType genericDocumentType0 = new GenericDocumentType("polypeptide_domain", "polypeptide_domain", "polypeptide_domain");
      GenericDOMImplementation genericDOMImplementation0 = new GenericDOMImplementation();
      GenericDocument genericDocument0 = new GenericDocument(genericDocumentType0, genericDOMImplementation0);
      ImageHandlerBase64Encoder imageHandlerBase64Encoder0 = new ImageHandlerBase64Encoder();
      DefaultExtensionHandler defaultExtensionHandler0 = new DefaultExtensionHandler();
      SVGGraphics2D sVGGraphics2D0 = new SVGGraphics2D(genericDocument0, imageHandlerBase64Encoder0, defaultExtensionHandler0, false);
      DebugGraphics debugGraphics0 = new DebugGraphics(sVGGraphics2D0);
      // Undeclared exception!
      try { 
        proteinMapPanel0.paintComponent(debugGraphics0);
        fail("Expecting exception: ClassCastException");
      
      } catch(ClassCastException e) {
         //
         // javax.swing.DebugGraphics cannot be cast to java.awt.Graphics2D
         //
         verifyException("uk.ac.sanger.artemis.components.genebuilder.ProteinMapPanel", e);
      }
  }

  @Test(timeout = 4000)
  public void test05()  throws Throwable  {
      Clipboard clipboard0 = new Clipboard("");
      Selection selection0 = new Selection(clipboard0);
      ProteinMapPanel proteinMapPanel0 = new ProteinMapPanel((Feature) null, (ChadoCanonicalGene) null, selection0);
      GenericDocumentType genericDocumentType0 = new GenericDocumentType("polypeptide_domain", "cytoplasm_location", "transmembrane_polypeptide_region");
      GenericDOMImplementation genericDOMImplementation0 = new GenericDOMImplementation();
      GenericDocument genericDocument0 = new GenericDocument(genericDocumentType0, genericDOMImplementation0);
      SVGGraphics2D sVGGraphics2D0 = new SVGGraphics2D(genericDocument0);
      SVGGraphics2D sVGGraphics2D1 = new SVGGraphics2D(sVGGraphics2D0);
      String[] stringArray0 = new String[3];
      stringArray0[0] = "transmembrane_polypeptide_region";
      stringArray0[1] = "ISO-8859-1";
      stringArray0[2] = "ISO-8859-1";
      // Undeclared exception!
      try { 
        proteinMapPanel0.drawPrediction((Feature) null, sVGGraphics2D1, 0, (short)8, (short)16, (short)1, stringArray0);
        fail("Expecting exception: NullPointerException");
      
      } catch(NullPointerException e) {
         //
         // no message in exception (getMessage() returned null)
         //
         verifyException("uk.ac.sanger.artemis.components.genebuilder.ProteinMapPanel", e);
      }
  }

  @Test(timeout = 4000)
  public void test06()  throws Throwable  {
      ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
      FeatureVector featureVector0 = new FeatureVector();
      StringVector stringVector0 = uk.ac.sanger.artemis.Feature.getAllQualifierNames(featureVector0);
      chadoCanonicalGene0.containsTranscript(stringVector0);
      ProteinMapPanel proteinMapPanel0 = new ProteinMapPanel((Feature) null, chadoCanonicalGene0, (Selection) null);
      GenericDocumentType genericDocumentType0 = new GenericDocumentType("polypeptide_domain", "polypeptide_domain", "polypeptide_domain");
      DOMImplementation dOMImplementation0 = GenericDOMImplementation.getDOMImplementation();
      GenericDocument genericDocument0 = new GenericDocument(genericDocumentType0, dOMImplementation0);
      DefaultImageHandler defaultImageHandler0 = new DefaultImageHandler();
      DefaultExtensionHandler defaultExtensionHandler0 = new DefaultExtensionHandler();
      SVGGraphics2D sVGGraphics2D0 = new SVGGraphics2D(genericDocument0, defaultImageHandler0, defaultExtensionHandler0, true);
      SVGGraphics2D sVGGraphics2D1 = new SVGGraphics2D(sVGGraphics2D0);
      // Undeclared exception!
      try { 
        proteinMapPanel0.drawDomain((Feature) null, sVGGraphics2D1, (short)4, (-2039), (short)1, (short)1);
        fail("Expecting exception: NullPointerException");
      
      } catch(NullPointerException e) {
         //
         // no message in exception (getMessage() returned null)
         //
         verifyException("uk.ac.sanger.artemis.components.genebuilder.ProteinMapPanel", e);
      }
  }

  @Test(timeout = 4000)
  public void test07()  throws Throwable  {
      // Undeclared exception!
      try { 
        ProteinMapPanel.getProteinMapQualifiers((uk.ac.sanger.artemis.Feature) null);
        fail("Expecting exception: NullPointerException");
      
      } catch(NullPointerException e) {
         //
         // no message in exception (getMessage() returned null)
         //
         verifyException("uk.ac.sanger.artemis.components.genebuilder.ProteinMapPanel", e);
      }
  }

  @Test(timeout = 4000)
  public void test08()  throws Throwable  {
      // Undeclared exception!
      try { 
        ProteinMapPanel.getProteinsWithProteinMapElement((GFFStreamFeature) null);
        fail("Expecting exception: NullPointerException");
      
      } catch(NullPointerException e) {
         //
         // no message in exception (getMessage() returned null)
         //
         verifyException("uk.ac.sanger.artemis.components.genebuilder.ProteinMapPanel", e);
      }
  }

  @Test(timeout = 4000)
  public void test09()  throws Throwable  {
      ClusterLazyQualifierValue clusterLazyQualifierValue0 = new ClusterLazyQualifierValue(":vcma-^;@5YIzf", ":vcma-^;@5YIzf", (GFFStreamFeature) null);
      QualifierLazyLoading qualifierLazyLoading0 = new QualifierLazyLoading(":vcma-^;@5YIzf", clusterLazyQualifierValue0);
      boolean boolean0 = ProteinMapPanel.isProteinMapElement(qualifierLazyLoading0);
      assertFalse(boolean0);
  }

  @Test(timeout = 4000)
  public void test10()  throws Throwable  {
      QualifierVector qualifierVector0 = new QualifierVector();
      qualifierVector0.getQualifierByName("");
      // Undeclared exception!
      try { 
        ProteinMapPanel.isProteinMapElement((Qualifier) null);
        fail("Expecting exception: NullPointerException");
      
      } catch(NullPointerException e) {
         //
         // no message in exception (getMessage() returned null)
         //
         verifyException("uk.ac.sanger.artemis.components.genebuilder.ProteinMapPanel", e);
      }
  }

  @Test(timeout = 4000)
  public void test11()  throws Throwable  {
      Key key0 = Key.CDS;
      NewSimpleAssembly newSimpleAssembly0 = null;
      try {
        newSimpleAssembly0 = new NewSimpleAssembly("", "");
        fail("Expecting exception: NoClassDefFoundError");
      
      } catch(NoClassDefFoundError e) {
         //
         // Could not initialize class org.biojava.bio.seq.DNATools
         //
         verifyException("org.biojava.bio.seq.impl.NewAssembledSymbolList", e);
      }
  }

  @Test(timeout = 4000)
  public void test12()  throws Throwable  {
      Document document0 = null;
      IndexedGFFDocumentEntry indexedGFFDocumentEntry0 = new IndexedGFFDocumentEntry((Document) null);
  }

  @Test(timeout = 4000)
  public void test13()  throws Throwable  {
      String string0 = "query";
      GFFStreamFeature gFFStreamFeature0 = null;
      try {
        gFFStreamFeature0 = new GFFStreamFeature("query");
        fail("Expecting exception: IOException");
      
      } catch(Throwable e) {
         //
         // invalid GFF line: 8 fields needed (got 1 fields) from: query
         //
         verifyException("uk.ac.sanger.artemis.io.GFFStreamFeature", e);
      }
  }
}