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am__vrna_utils_HEADERS_DIST = utils/basic.h utils/strings.h \
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	utils/higher_order_functions.h utils/cpu.h utils/units.h \
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AMTAR = @AMTAR@
AM_CFLAGS = $(RNA_CFLAGS) $(PTHREAD_CFLAGS)
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CONFIG_DISABLE_C11_FEATURES = @CONFIG_DISABLE_C11_FEATURES@
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CONFIG_JSON = @CONFIG_JSON@
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CONFIG_NR_SAMPLING = @CONFIG_NR_SAMPLING@
CONFIG_OPENMP = @CONFIG_OPENMP@
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MACOSX_INSTALLER = @MACOSX_INSTALLER@
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PYTHON2_LDFLAGS = @PYTHON2_LDFLAGS@
PYTHON2_SO = @PYTHON2_SO@
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PYTHON3_CACHE_OPT1_EXT = @PYTHON3_CACHE_OPT1_EXT@
PYTHON3_CACHE_TAG = @PYTHON3_CACHE_TAG@
PYTHON3_DIR = @PYTHON3_DIR@
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PYTHON3_INC = @PYTHON3_INC@
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REFERENCE_MANUAL_PDF_NAME = @REFERENCE_MANUAL_PDF_NAME@
REFERENCE_MANUAL_TAGFILE = @REFERENCE_MANUAL_TAGFILE@
RNA_CFLAGS = @RNA_CFLAGS@
RNA_CPPFLAGS = @RNA_CPPFLAGS@
RNA_CXXFLAGS = @RNA_CXXFLAGS@
RNA_LDFLAGS = @RNA_LDFLAGS@
SED = @SED@
SET_MAKE = @SET_MAKE@
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SWIG = @SWIG@
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TUTORIAL_CMD_HTLATEX = @TUTORIAL_CMD_HTLATEX@
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TUTORIAL_SRCDIR = @TUTORIAL_SRCDIR@
USER_AR = @USER_AR@
USER_NM = @USER_NM@
USER_RANLIB = @USER_RANLIB@
VERSION = @VERSION@
VRNA_CFLAGS = @VRNA_CFLAGS@
VRNA_LIBS = @VRNA_LIBS@
VRNA_VERSION_MAJOR = @VRNA_VERSION_MAJOR@
VRNA_VERSION_MINOR = @VRNA_VERSION_MINOR@
VRNA_VERSION_PATCH = @VRNA_VERSION_PATCH@
XXD = @XXD@
abs_builddir = @abs_builddir@
abs_srcdir = @abs_srcdir@
abs_top_builddir = @abs_top_builddir@
abs_top_srcdir = @abs_top_srcdir@
ac_ct_AR = @ac_ct_AR@
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ac_ct_CXX = @ac_ct_CXX@
ac_ct_DUMPBIN = @ac_ct_DUMPBIN@
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am__quote = @am__quote@
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ax_pthread_config = @ax_pthread_config@
bibtex = @bibtex@
bindir = @bindir@
build = @build@
build_alias = @build_alias@
build_cpu = @build_cpu@
build_os = @build_os@
build_vendor = @build_vendor@
builddir = @builddir@
datadir = @datadir@
datarootdir = @datarootdir@
docdir = @docdir@
dot = @dot@
doxygen = @doxygen@
dvidir = @dvidir@
egrep = @egrep@
exec_prefix = @exec_prefix@
host = @host@
host_alias = @host_alias@
host_cpu = @host_cpu@
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host_vendor = @host_vendor@
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prefix = @prefix@
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sysconfdir = @sysconfdir@
target_alias = @target_alias@
top_build_prefix = @top_build_prefix@
top_builddir = @top_builddir@
top_srcdir = @top_srcdir@
AUTOMAKE_OPTIONS = subdir-objects
SUBDIRS = static
vrna_constraintsdir = $(pkgincludedir)/constraints
vrna_paramsdir = $(pkgincludedir)/params
vrna_utilsdir = $(pkgincludedir)/utils
vrna_iodir = $(pkgincludedir)/io
vrna_searchdir = $(pkgincludedir)/search
vrna_plottingdir = $(pkgincludedir)/plotting
vrna_puzzlerdir = $(pkgincludedir)/plotting/RNApuzzler
vrna_loopsdir = $(pkgincludedir)/loops
vrna_datastructuresdir = $(pkgincludedir)/datastructures
vrna_landscapedir = $(pkgincludedir)/landscape

# the library names to build
lib_LTLIBRARIES = libRNA.la

# convenience library
noinst_LTLIBRARIES = libRNA_conv.la libRNA_constraints.la \
	libRNA_datastructures.la libRNA_utils.la libRNA_plotting.la \
	libRNA_params.la libRNA_loops.la libRNA_eval.la \
	libRNA_landscape.la libRNA_special_const.la $(am__append_1) \
	$(am__append_3)

# where to install the headers on the system
libRNA_ladir = $(includedir)/ViennaRNA
libRNA_la_SOURCES = 

# ldflags to avoid version information
libRNA_la_LIBADD = libRNA_conv.la
libRNA_la_LDFLAGS = -avoid-version -static $(LTO_LDFLAGS) $(PTHREAD_LIBS)
libRNA_conv_la_LIBADD = libRNA_constraints.la libRNA_datastructures.la \
	libRNA_utils.la libRNA_plotting.la libRNA_params.la \
	libRNA_eval.la libRNA_loops.la libRNA_landscape.la \
	$(am__append_2) $(am__append_4)
@VRNA_AM_SWITCH_SIMD_SSE41_TRUE@libRNA_utils_sse41_la_CFLAGS = $(SIMD_SSE41_FLAGS)
@VRNA_AM_SWITCH_SIMD_AVX512_TRUE@libRNA_utils_avx512_la_CFLAGS = $(SIMD_AVX512_FLAGS)
@VRNA_AM_SWITCH_SVM_FALSE@nodist_EXTRA_libRNA_la_SOURCES = 

# Dummy C++ source to cause C++ linking.
@VRNA_AM_SWITCH_SVM_TRUE@nodist_EXTRA_libRNA_la_SOURCES = dummy.cxx
@VRNA_AM_SWITCH_SVM_TRUE@SVM_SRC = ../@LIBSVM_DIR@/svm.cpp
@VRNA_AM_SWITCH_SVM_TRUE@SVM_INC = -I$(top_srcdir)/src/@LIBSVM_DIR@
@VRNA_AM_SWITCH_SVM_TRUE@SVM_H = ../@LIBSVM_DIR@/svm.h
@VRNA_AM_SWITCH_SVM_TRUE@SVM_UTILS = utils/svm_utils.c
@VRNA_AM_SWITCH_SVM_TRUE@SVM_UTILS_H = utils/svm.h
@VRNA_AM_SWITCH_SVM_TRUE@SVM_UTILS_H_OLD = svm_utils.h
@VRNA_AM_SWITCH_JSON_TRUE@JSON_SRC = ../json/json.c
@VRNA_AM_SWITCH_JSON_TRUE@JSON_H = ../json/json.h
@VRNA_AM_SWITCH_JSON_TRUE@JSON_INC = -I$(top_srcdir)/src/json
pkginclude_HEADERS = pair_mat.h RNAstruct.h dist_vars.h mfe.h \
	mfe_window.h fold.h part_func.h part_func_window.h \
	stringdist.h edit_cost.h fold_vars.h profiledist.h treedist.h \
	inverse.h subopt.h cofold.h duplex.h alifold.h part_func_co.h \
	concentrations.h ProfileAln.h LPfold.h Lfold.h part_func_up.h \
	ribo.h findpath.h data_structures.h char_stream.h \
	stream_output.h fold_compound.h MEA.h mm.h loop_energies.h \
	exterior_loops.h hairpin_loops.h interior_loops.h \
	multibranch_loops.h 2Dfold.h 2Dpfold.h PKplex.h pk_plex.h \
	ali_plex.h plex.h snofold.h snoop.h move_set.h gquad.h \
	constraints.h eval.h perturbation_fold.h centroid.h utils.h \
	structure_utils.h string_utils.h aln_util.h model.h \
	dp_matrices.h PS_dot.h plot_structure.h plot_aln.h \
	plot_utils.h plot_layouts.h naview.h boltzmann_sampling.h \
	equilibrium_probs.h constraints_ligand.h constraints_SHAPE.h \
	constraints_hard.h constraints_soft.h alphabet.h sequence.h \
	grammar.h structured_domains.h unstructured_domains.h \
	file_utils.h file_formats.h file_formats_msa.h energy_par.h \
	energy_const.h params.h read_epars.h convert_epars.h \
	commands.h units.h combinatorics.h neighbor.h walk.h \
	heat_capacity.h ${SVM_UTILS_H_OLD} ${SVM_H} ${JSON_H} \
	$(am__append_5)
vrna_constraints_HEADERS = \
    constraints/basic.h \
    constraints/ligand.h \
    constraints/SHAPE.h \
    constraints/hard.h \
    constraints/soft.h

vrna_loops_HEADERS = \
    loops/all.h \
    loops/external.h \
    loops/hairpin.h \
    loops/internal.h \
    loops/multibranch.h

vrna_utils_HEADERS = \
    utils/basic.h \
    utils/strings.h \
    utils/structures.h \
    utils/alignments.h \
    utils/higher_order_functions.h \
    utils/cpu.h \
    utils/units.h \
    ${SVM_UTILS_H}

vrna_search_HEADERS = \
    search/BoyerMoore.h

vrna_plotting_HEADERS = \
    plotting/alignments.h \
    plotting/layouts.h \
    plotting/probabilities.h \
    plotting/structures.h \
    plotting/utils.h \
    plotting/naview.h

vrna_puzzler_HEADERS = \
    plotting/RNApuzzler/RNApuzzler.h \
    plotting/RNApuzzler/RNAturtle.h

vrna_io_HEADERS = \
    io/utils.h \
    io/file_formats.h \
    io/file_formats_msa.h

vrna_params_HEADERS = \
    params/default.h \
    params/constants.h \
    params/basic.h \
    params/io.h \
    params/convert.h

vrna_datastructures_HEADERS = \
    datastructures/basic.h \
    datastructures/lists.h \
    datastructures/char_stream.h \
    datastructures/stream_output.h \
    datastructures/hash_tables.h \
    datastructures/heap.h

vrna_landscape_HEADERS = \
    landscape/paths.h \
    landscape/findpath.h \
    landscape/neighbor.h \
    landscape/walk.h \
    landscape/move.h

libRNA_conv_la_SOURCES = fold_compound.c dist_vars.c part_func.c \
	part_func_wrappers.c pf_fold.c treedist.c inverse.c \
	ProfileDist.c RNAstruct.c mfe.c mfe_window.c mfe_wrappers.c \
	mfe_window_wrappers.c fold.c stringdist.c subopt.c Lfold.c \
	cofold.c part_func_co.c concentrations.c ProfileAln.c duplex.c \
	alifold.c alipfold.c LPfold.c part_func_up.c ribo.c MEA.c mm.c \
	2Dfold.c 2Dpfold.c plex_functions.c ali_plex.c c_plex.c plex.c \
	snofold.c snoop.c gquad.c perturbation_fold.c centroid.c \
	model.c dp_matrices.c boltzmann_sampling.c bs_wrappers.c \
	equilibrium_probs.c ${SVM_SRC} ${JSON_SRC} alphabet.c \
	sequence.c unstructured_domains.c grammar.c heat_capacity.c \
	$(am__append_6)
libRNA_eval_la_SOURCES = \
    eval.c \
    eval_wrappers.c

libRNA_constraints_la_SOURCES = \
    constraints/constraints.c \
    constraints/SHAPE.c \
    constraints/hard.c \
    constraints/soft.c \
    constraints/ligand.c

libRNA_utils_la_SOURCES = \
    utils/utils.c \
    utils/string_utils.c \
    utils/structure_utils.c \
    utils/structure_tree.c \
    utils/msa_utils.c \
    utils/higher_order_functions.c \
    utils/cpu.c \
    utils/units.c \
    io/io_utils.c \
    io/file_formats.c \
    io/file_formats_msa.c \
    search/BoyerMoore.c \
    commands.c \
    combinatorics.c \
    ${SVM_UTILS}

@VRNA_AM_SWITCH_SIMD_SSE41_TRUE@libRNA_utils_sse41_la_SOURCES = \
@VRNA_AM_SWITCH_SIMD_SSE41_TRUE@    utils/higher_order_functions_sse41.c

@VRNA_AM_SWITCH_SIMD_AVX512_TRUE@libRNA_utils_avx512_la_SOURCES = \
@VRNA_AM_SWITCH_SIMD_AVX512_TRUE@    utils/higher_order_functions_avx512.c

libRNA_plotting_la_SOURCES = \
    plotting/alignments.c \
    plotting/layouts.c \
    plotting/probabilities.c \
    plotting/structures.c \
    plotting/plot_utils.c \
    plotting/naview.c \
    plotting/RNApuzzler/RNApuzzler.c \
    plotting/RNApuzzler/RNAturtle.c

libRNA_loops_la_SOURCES = \
    loops/external.c \
    loops/external_bt.c \
    loops/external_pf.c \
    loops/hairpin.c \
    loops/hairpin_bt.c \
    loops/hairpin_pf.c \
    loops/internal.c \
    loops/internal_bt.c \
    loops/internal_pf.c \
    loops/multibranch.c \
    loops/multibranch_bt.c \
    loops/multibranch_pf.c

libRNA_params_la_SOURCES = \
    params/io.c \
    params/default.c \
    params/params.c \
    params/convert.c

libRNA_datastructures_la_SOURCES = \
    datastructures/basic_datastructures.c \
    datastructures/lists.c \
    datastructures/char_stream.c \
    datastructures/stream_output.c \
    datastructures/hash_tables.c \
    datastructures/heap.c

libRNA_landscape_la_SOURCES = \
    move_set.c \
    landscape/move.c \
    landscape/findpath.c \
    landscape/neighbor.c \
    landscape/walk.c

libRNA_special_const_la_SOURCES = \
    special_const.c \
    ugly_bt.c

RNAPUZZLER_H = \
    plotting/RNApuzzler/headers/AABB_struct.h \
    plotting/RNApuzzler/headers/boundingBoxes_struct.h \
    plotting/RNApuzzler/headers/configArc_struct.h \
    plotting/RNApuzzler/headers/config_struct.h \
    plotting/RNApuzzler/headers/configtree_struct.h \
    plotting/RNApuzzler/headers/tBaseInformation_struct.h

RNAPUZZLER_INC = \
    plotting/RNApuzzler/includes/coordinates.inc \
    plotting/RNApuzzler/includes/definitions.inc \
    plotting/RNApuzzler/includes/vector_math.inc \
    plotting/RNApuzzler/includes/boundingBoxes.inc \
    plotting/RNApuzzler/includes/configtree.inc \
    plotting/RNApuzzler/includes/drawingconfig.inc \
    plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc \
    plotting/RNApuzzler/includes/intersectLevelLines.inc \
    plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc \
    plotting/RNApuzzler/includes/postscriptArcs.inc \
    plotting/RNApuzzler/includes/boundingWedge.inc \
    plotting/RNApuzzler/includes/calcDeltas.inc \
    plotting/RNApuzzler/includes/handleAncestorIntersections.inc \
    plotting/RNApuzzler/includes/handleConfigChanges.inc \
    plotting/RNApuzzler/includes/handleSiblingIntersections.inc \
    plotting/RNApuzzler/includes/intersectionType.inc \
    plotting/RNApuzzler/includes/optimize.inc \
    plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc \
    plotting/RNApuzzler/includes/resolveIntersections.inc \
    plotting/RNApuzzler/includes/rotationAngle.inc \
    plotting/RNApuzzler/includes/svgArcs.inc

noinst_HEADERS = params/intl11.h \
                  params/intl11dH.h \
                  params/intl21.h \
                  params/intl21dH.h \
                  params/intl22.h \
                  params/intl22dH.h \
                  params/1.8.4_epars.h \
                  params/1.8.4_intloops.h \
                  ${RNAPUZZLER_H} \
                  list.h \
                  ${SVM_H} \
                  ${JSON_H}\
                  special_const.h \
                  ugly_bt.h

nodist_pkginclude_HEADERS = vrna_config.h
EXTRA_DIST = $(pkginclude_HEADERS) constraints/hc_depot.inc \
	loops/external_hc.inc loops/external_sc.inc \
	loops/external_sc_pf.inc loops/hairpin_hc.inc \
	loops/hairpin_sc.inc loops/hairpin_sc_pf.inc \
	loops/internal_hc.inc loops/internal_sc.inc \
	loops/internal_sc_pf.inc loops/multibranch_hc.inc \
	loops/multibranch_sc.inc loops/multibranch_sc_pf.inc \
	params/svm_model_avg.inc params/svm_model_sd.inc \
	data_structures_nonred.inc plotting/ps_helpers.inc \
	plotting/svg_helpers.inc ${RNAPUZZLER_INC} \
	landscape/local_neighbors.inc ${SVM_H} ${JSON_H} \
	color_output.inc special_const.h ugly_bt.h $(am__append_7)
all: all-recursive

.SUFFIXES:
.SUFFIXES: .c .cpp .cxx .lo .o .obj
$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
	@for dep in $?; do \
	  case '$(am__configure_deps)' in \
	    *$$dep*) \
	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
	        && { if test -f $@; then exit 0; else break; fi; }; \
	      exit 1;; \
	  esac; \
	done; \
	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu src/ViennaRNA/Makefile'; \
	$(am__cd) $(top_srcdir) && \
	  $(AUTOMAKE) --gnu src/ViennaRNA/Makefile
Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
	@case '$?' in \
	  *config.status*) \
	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
	  *) \
	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__maybe_remake_depfiles)'; \
	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__maybe_remake_depfiles);; \
	esac;

$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh

$(top_srcdir)/configure:  $(am__configure_deps)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(am__aclocal_m4_deps):
vrna_config.h: $(top_builddir)/config.status $(srcdir)/vrna_config.h.in
	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@

install-libLTLIBRARIES: $(lib_LTLIBRARIES)
	@$(NORMAL_INSTALL)
	@list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \
	list2=; for p in $$list; do \
	  if test -f $$p; then \
	    list2="$$list2 $$p"; \
	  else :; fi; \
	done; \
	test -z "$$list2" || { \
	  echo " $(MKDIR_P) '$(DESTDIR)$(libdir)'"; \
	  $(MKDIR_P) "$(DESTDIR)$(libdir)" || exit 1; \
	  echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(libdir)'"; \
	  $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(libdir)"; \
	}

uninstall-libLTLIBRARIES:
	@$(NORMAL_UNINSTALL)
	@list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \
	for p in $$list; do \
	  $(am__strip_dir) \
	  echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(libdir)/$$f'"; \
	  $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(libdir)/$$f"; \
	done

clean-libLTLIBRARIES:
	-test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES)
	@list='$(lib_LTLIBRARIES)'; \
	locs=`for p in $$list; do echo $$p; done | \
	      sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \
	      sort -u`; \
	test -z "$$locs" || { \
	  echo rm -f $${locs}; \
	  rm -f $${locs}; \
	}

clean-noinstLTLIBRARIES:
	-test -z "$(noinst_LTLIBRARIES)" || rm -f $(noinst_LTLIBRARIES)
	@list='$(noinst_LTLIBRARIES)'; \
	locs=`for p in $$list; do echo $$p; done | \
	      sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \
	      sort -u`; \
	test -z "$$locs" || { \
	  echo rm -f $${locs}; \
	  rm -f $${locs}; \
	}

libRNA.la: $(libRNA_la_OBJECTS) $(libRNA_la_DEPENDENCIES) $(EXTRA_libRNA_la_DEPENDENCIES) 
	$(AM_V_CXXLD)$(libRNA_la_LINK) -rpath $(libdir) $(libRNA_la_OBJECTS) $(libRNA_la_LIBADD) $(LIBS)
constraints/$(am__dirstamp):
	@$(MKDIR_P) constraints
	@: > constraints/$(am__dirstamp)
constraints/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) constraints/$(DEPDIR)
	@: > constraints/$(DEPDIR)/$(am__dirstamp)
constraints/constraints.lo: constraints/$(am__dirstamp) \
	constraints/$(DEPDIR)/$(am__dirstamp)
constraints/SHAPE.lo: constraints/$(am__dirstamp) \
	constraints/$(DEPDIR)/$(am__dirstamp)
constraints/hard.lo: constraints/$(am__dirstamp) \
	constraints/$(DEPDIR)/$(am__dirstamp)
constraints/soft.lo: constraints/$(am__dirstamp) \
	constraints/$(DEPDIR)/$(am__dirstamp)
constraints/ligand.lo: constraints/$(am__dirstamp) \
	constraints/$(DEPDIR)/$(am__dirstamp)

libRNA_constraints.la: $(libRNA_constraints_la_OBJECTS) $(libRNA_constraints_la_DEPENDENCIES) $(EXTRA_libRNA_constraints_la_DEPENDENCIES) 
	$(AM_V_CCLD)$(LINK)  $(libRNA_constraints_la_OBJECTS) $(libRNA_constraints_la_LIBADD) $(LIBS)
../@LIBSVM_DIR@/$(am__dirstamp):
	@$(MKDIR_P) ../@LIBSVM_DIR@
	@: > ../@LIBSVM_DIR@/$(am__dirstamp)
../@LIBSVM_DIR@/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) ../@LIBSVM_DIR@/$(DEPDIR)
	@: > ../@LIBSVM_DIR@/$(DEPDIR)/$(am__dirstamp)
../@LIBSVM_DIR@/svm.lo: ../@LIBSVM_DIR@/$(am__dirstamp) \
	../@LIBSVM_DIR@/$(DEPDIR)/$(am__dirstamp)
../json/$(am__dirstamp):
	@$(MKDIR_P) ../json
	@: > ../json/$(am__dirstamp)
../json/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) ../json/$(DEPDIR)
	@: > ../json/$(DEPDIR)/$(am__dirstamp)
../json/json.lo: ../json/$(am__dirstamp) \
	../json/$(DEPDIR)/$(am__dirstamp)

libRNA_conv.la: $(libRNA_conv_la_OBJECTS) $(libRNA_conv_la_DEPENDENCIES) $(EXTRA_libRNA_conv_la_DEPENDENCIES) 
	$(AM_V_CXXLD)$(CXXLINK)  $(libRNA_conv_la_OBJECTS) $(libRNA_conv_la_LIBADD) $(LIBS)
datastructures/$(am__dirstamp):
	@$(MKDIR_P) datastructures
	@: > datastructures/$(am__dirstamp)
datastructures/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) datastructures/$(DEPDIR)
	@: > datastructures/$(DEPDIR)/$(am__dirstamp)
datastructures/basic_datastructures.lo:  \
	datastructures/$(am__dirstamp) \
	datastructures/$(DEPDIR)/$(am__dirstamp)
datastructures/lists.lo: datastructures/$(am__dirstamp) \
	datastructures/$(DEPDIR)/$(am__dirstamp)
datastructures/char_stream.lo: datastructures/$(am__dirstamp) \
	datastructures/$(DEPDIR)/$(am__dirstamp)
datastructures/stream_output.lo: datastructures/$(am__dirstamp) \
	datastructures/$(DEPDIR)/$(am__dirstamp)
datastructures/hash_tables.lo: datastructures/$(am__dirstamp) \
	datastructures/$(DEPDIR)/$(am__dirstamp)
datastructures/heap.lo: datastructures/$(am__dirstamp) \
	datastructures/$(DEPDIR)/$(am__dirstamp)

libRNA_datastructures.la: $(libRNA_datastructures_la_OBJECTS) $(libRNA_datastructures_la_DEPENDENCIES) $(EXTRA_libRNA_datastructures_la_DEPENDENCIES) 
	$(AM_V_CCLD)$(LINK)  $(libRNA_datastructures_la_OBJECTS) $(libRNA_datastructures_la_LIBADD) $(LIBS)

libRNA_eval.la: $(libRNA_eval_la_OBJECTS) $(libRNA_eval_la_DEPENDENCIES) $(EXTRA_libRNA_eval_la_DEPENDENCIES) 
	$(AM_V_CCLD)$(LINK)  $(libRNA_eval_la_OBJECTS) $(libRNA_eval_la_LIBADD) $(LIBS)
landscape/$(am__dirstamp):
	@$(MKDIR_P) landscape
	@: > landscape/$(am__dirstamp)
landscape/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) landscape/$(DEPDIR)
	@: > landscape/$(DEPDIR)/$(am__dirstamp)
landscape/move.lo: landscape/$(am__dirstamp) \
	landscape/$(DEPDIR)/$(am__dirstamp)
landscape/findpath.lo: landscape/$(am__dirstamp) \
	landscape/$(DEPDIR)/$(am__dirstamp)
landscape/neighbor.lo: landscape/$(am__dirstamp) \
	landscape/$(DEPDIR)/$(am__dirstamp)
landscape/walk.lo: landscape/$(am__dirstamp) \
	landscape/$(DEPDIR)/$(am__dirstamp)

libRNA_landscape.la: $(libRNA_landscape_la_OBJECTS) $(libRNA_landscape_la_DEPENDENCIES) $(EXTRA_libRNA_landscape_la_DEPENDENCIES) 
	$(AM_V_CCLD)$(LINK)  $(libRNA_landscape_la_OBJECTS) $(libRNA_landscape_la_LIBADD) $(LIBS)
loops/$(am__dirstamp):
	@$(MKDIR_P) loops
	@: > loops/$(am__dirstamp)
loops/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) loops/$(DEPDIR)
	@: > loops/$(DEPDIR)/$(am__dirstamp)
loops/external.lo: loops/$(am__dirstamp) \
	loops/$(DEPDIR)/$(am__dirstamp)
loops/external_bt.lo: loops/$(am__dirstamp) \
	loops/$(DEPDIR)/$(am__dirstamp)
loops/external_pf.lo: loops/$(am__dirstamp) \
	loops/$(DEPDIR)/$(am__dirstamp)
loops/hairpin.lo: loops/$(am__dirstamp) \
	loops/$(DEPDIR)/$(am__dirstamp)
loops/hairpin_bt.lo: loops/$(am__dirstamp) \
	loops/$(DEPDIR)/$(am__dirstamp)
loops/hairpin_pf.lo: loops/$(am__dirstamp) \
	loops/$(DEPDIR)/$(am__dirstamp)
loops/internal.lo: loops/$(am__dirstamp) \
	loops/$(DEPDIR)/$(am__dirstamp)
loops/internal_bt.lo: loops/$(am__dirstamp) \
	loops/$(DEPDIR)/$(am__dirstamp)
loops/internal_pf.lo: loops/$(am__dirstamp) \
	loops/$(DEPDIR)/$(am__dirstamp)
loops/multibranch.lo: loops/$(am__dirstamp) \
	loops/$(DEPDIR)/$(am__dirstamp)
loops/multibranch_bt.lo: loops/$(am__dirstamp) \
	loops/$(DEPDIR)/$(am__dirstamp)
loops/multibranch_pf.lo: loops/$(am__dirstamp) \
	loops/$(DEPDIR)/$(am__dirstamp)

libRNA_loops.la: $(libRNA_loops_la_OBJECTS) $(libRNA_loops_la_DEPENDENCIES) $(EXTRA_libRNA_loops_la_DEPENDENCIES) 
	$(AM_V_CCLD)$(LINK)  $(libRNA_loops_la_OBJECTS) $(libRNA_loops_la_LIBADD) $(LIBS)
params/$(am__dirstamp):
	@$(MKDIR_P) params
	@: > params/$(am__dirstamp)
params/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) params/$(DEPDIR)
	@: > params/$(DEPDIR)/$(am__dirstamp)
params/io.lo: params/$(am__dirstamp) params/$(DEPDIR)/$(am__dirstamp)
params/default.lo: params/$(am__dirstamp) \
	params/$(DEPDIR)/$(am__dirstamp)
params/params.lo: params/$(am__dirstamp) \
	params/$(DEPDIR)/$(am__dirstamp)
params/convert.lo: params/$(am__dirstamp) \
	params/$(DEPDIR)/$(am__dirstamp)

libRNA_params.la: $(libRNA_params_la_OBJECTS) $(libRNA_params_la_DEPENDENCIES) $(EXTRA_libRNA_params_la_DEPENDENCIES) 
	$(AM_V_CCLD)$(LINK)  $(libRNA_params_la_OBJECTS) $(libRNA_params_la_LIBADD) $(LIBS)
plotting/$(am__dirstamp):
	@$(MKDIR_P) plotting
	@: > plotting/$(am__dirstamp)
plotting/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) plotting/$(DEPDIR)
	@: > plotting/$(DEPDIR)/$(am__dirstamp)
plotting/alignments.lo: plotting/$(am__dirstamp) \
	plotting/$(DEPDIR)/$(am__dirstamp)
plotting/layouts.lo: plotting/$(am__dirstamp) \
	plotting/$(DEPDIR)/$(am__dirstamp)
plotting/probabilities.lo: plotting/$(am__dirstamp) \
	plotting/$(DEPDIR)/$(am__dirstamp)
plotting/structures.lo: plotting/$(am__dirstamp) \
	plotting/$(DEPDIR)/$(am__dirstamp)
plotting/plot_utils.lo: plotting/$(am__dirstamp) \
	plotting/$(DEPDIR)/$(am__dirstamp)
plotting/naview.lo: plotting/$(am__dirstamp) \
	plotting/$(DEPDIR)/$(am__dirstamp)
plotting/RNApuzzler/$(am__dirstamp):
	@$(MKDIR_P) plotting/RNApuzzler
	@: > plotting/RNApuzzler/$(am__dirstamp)
plotting/RNApuzzler/$(DEPDIR)/$(am__dirstamp):
	@$(MKDIR_P) plotting/RNApuzzler/$(DEPDIR)
	@: > plotting/RNApuzzler/$(DEPDIR)/$(am__dirstamp)
plotting/RNApuzzler/RNApuzzler.lo:  \
	plotting/RNApuzzler/$(am__dirstamp) \
	plotting/RNApuzzler/$(DEPDIR)/$(am__dirstamp)
plotting/RNApuzzler/RNAturtle.lo: plotting/RNApuzzler/$(am__dirstamp) \
	plotting/RNApuzzler/$(DEPDIR)/$(am__dirstamp)

libRNA_plotting.la: $(libRNA_plotting_la_OBJECTS) $(libRNA_plotting_la_DEPENDENCIES) $(EXTRA_libRNA_plotting_la_DEPENDENCIES) 
	$(AM_V_CCLD)$(LINK)  $(libRNA_plotting_la_OBJECTS) $(libRNA_plotting_la_LIBADD) $(LIBS)

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	maintainer-clean-generic mostlyclean mostlyclean-compile \
	mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
	tags tags-am uninstall uninstall-am uninstall-libLTLIBRARIES \
	uninstall-nodist_pkgincludeHEADERS uninstall-pkgincludeHEADERS \
	uninstall-vrna_constraintsHEADERS \
	uninstall-vrna_datastructuresHEADERS uninstall-vrna_ioHEADERS \
	uninstall-vrna_landscapeHEADERS uninstall-vrna_loopsHEADERS \
	uninstall-vrna_paramsHEADERS uninstall-vrna_plottingHEADERS \
	uninstall-vrna_puzzlerHEADERS uninstall-vrna_searchHEADERS \
	uninstall-vrna_utilsHEADERS

.PRECIOUS: Makefile


# static library for subpackages
all-local:      libRNA.a

libRNA.a: libRNA.la
	$(AM_V_GEN)( \
    $(LIBTOOL) --config > libtoolconfig.tmp && \
    ( \. ./libtoolconfig.tmp; cp "$$objdir/libRNA.a" ./ ) && \
    rm -f libtoolconfig.tmp \
  )

clean-local:
	-rm -f libRNA.a

# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT: