/* * This file is part of ELKI: * Environment for Developing KDD-Applications Supported by Index-Structures * * Copyright (C) 2018 * ELKI Development Team * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU Affero General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see . */ package de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.initialization; import org.junit.Test; import de.lmu.ifi.dbs.elki.algorithm.clustering.AbstractClusterAlgorithmTest; import de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.CLARA; import de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.KMeans; import de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.SingleAssignmentKMeans; import de.lmu.ifi.dbs.elki.data.Clustering; import de.lmu.ifi.dbs.elki.data.DoubleVector; import de.lmu.ifi.dbs.elki.database.Database; import de.lmu.ifi.dbs.elki.utilities.ELKIBuilder; /** * Performs a single assignment with different k-means initializations. * * @author Erich Schubert * @since 0.7.5 */ public class KMeansPlusPlusInitialMeansTest extends AbstractClusterAlgorithmTest { /** * Run KMeans with fixed parameters and compare the result to a golden * standard. */ @Test public void testSingleAssignmentKMeansPlusPlus() { Database db = makeSimpleDatabase(UNITTEST + "different-densities-2d-no-noise.ascii", 1000); Clustering result = new ELKIBuilder>(SingleAssignmentKMeans.class) // .with(KMeans.K_ID, 5) // .with(KMeans.SEED_ID, 3) // .with(KMeans.INIT_ID, KMeansPlusPlusInitialMeans.class) // .build().run(db); testFMeasure(db, result, 0.99205); testClusterSizes(result, new int[] { 197, 199, 200, 201, 203 }); } /** * Run CLARA with fixed parameters and compare the result to a golden * standard. */ @Test public void testSingleAssignmentKMeansPlusPlusMedoids() { Database db = makeSimpleDatabase(UNITTEST + "different-densities-2d-no-noise.ascii", 1000); Clustering result = new ELKIBuilder>(CLARA.class) // .with(KMeans.K_ID, 5) // .with(KMeans.SEED_ID, 3) // .with(KMeans.INIT_ID, KMeansPlusPlusInitialMeans.class) // .with(KMeans.MAXITER_ID, 1) // .with(CLARA.Parameterizer.NOKEEPMED_ID) // .with(CLARA.Parameterizer.SAMPLESIZE_ID, 10) // .with(CLARA.Parameterizer.RANDOM_ID, 0) // .build().run(db); testFMeasure(db, result, 0.99602); testClusterSizes(result, new int[] { 198, 200, 200, 200, 202 }); } }