/* * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. * Copyright (c) 2001-2004, The GROMACS development team. * Copyright (c) 2011,2014,2015,2018,2019, by the GROMACS development team, led by * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, * and including many others, as listed in the AUTHORS file in the * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * * GROMACS is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with GROMACS; if not, see * http://www.gnu.org/licenses, or write to the Free Software Foundation, * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * * If you want to redistribute modifications to GROMACS, please * consider that scientific software is very special. Version * control is crucial - bugs must be traceable. We will be happy to * consider code for inclusion in the official distribution, but * derived work must not be called official GROMACS. Details are found * in the README & COPYING files - if they are missing, get the * official version at http://www.gromacs.org. * * To help us fund GROMACS development, we humbly ask that you cite * the research papers on the package. Check out http://www.gromacs.org. */ /*! \libinternal \file * \brief * Declares PreprocessingBondAtomType. * * \author David van der Spoel * \author Paul Bauer * \inlibraryapi * \ingroup module_preprocessing */ #ifndef GMX_GMXPREPROCESS_GPP_BOND_ATOMTYPE_H #define GMX_GMXPREPROCESS_GPP_BOND_ATOMTYPE_H #include #include #include "gromacs/utility/classhelpers.h" struct t_symtab; /*! \libinternal \brief * Storage for all bonded atomtypes during simulation preprocessing. */ class PreprocessingBondAtomType { public: PreprocessingBondAtomType(); ~PreprocessingBondAtomType(); //! Get number of defined bond atom types. size_t size() const; /*! \brief * Get name of atom from internal bond atom type number. * * \param[in] nt Internal number of atom type. * \returns The type name. */ const char* atomNameFromBondAtomType(int nt) const; /*! \brief * Get bond atom type index for atom type name if present in the database, or NOTSET. * * \todo The code should be changed to instead use a gmx::compat version * of std::optional to return a handle to the element being searched, * or an empty optional construct if the entry has not been found. * * \param[in] str Input string to search type for. * \returns Atomtype as integer. */ int bondAtomTypeFromName(const std::string& str) const; /*! \brief * Add a complete new bond atom type. * * \param[in] tab Symbol table. * \param[in] name Atom name. * \returns The number of entries in database or the type number of an already set type. */ int addBondAtomType(t_symtab* tab, const std::string& name); /*! \brief * If a value is within the range of the current types or not. * * \param[in] nt Value to check. * \returns True if value is in range. */ bool isSet(int nt) const; private: class Impl; //! Pimpl that holds the data. gmx::PrivateImplPointer impl_; }; #endif