.. _MIGRATING: MIGRATING ********* This document describes the major changes occurring between versions of Modules. It provides an overview of the new features and changed behaviors that will be encountered when upgrading. Migrating from v4.5 to v4.6 =========================== This new version is backward-compatible with v4.5 and primarily fixes bugs and adds new features. New features ------------ Version 4.6 introduces new functionalities that are described in this section. sh-to-mod sub-command ^^^^^^^^^^^^^^^^^^^^^ The :subcmd:`sh-to-mod` sub-command is added to output as a modulefile content the environment changes done by the evaluation of a shell script passed as argument. :subcmd:`sh-to-mod` is especially useful for software providing a shell script for their enablement in shell session: it can convert these scripts into modulefiles. Say for instance, a *foo* software has been installed and it provides a ``foo-setup.sh`` script to activate *foo* software in user environment: .. code-block:: console $ cat /path/to/foo-1.2/foo-setup.sh #!/bin/sh export FOOENV="$1" export PATH=/path/to/foo-1.2/bin:$PATH alias foo='foobin -q -l' Calling ``module sh-to-mod`` on this shell script outputs the environment changes it performs as a modulefile content: .. code-block:: console $ module sh-to-mod sh /path/to/foo-1.2/foo-setup.sh arg1 #%Module prepend-path PATH /path/to/foo-1.2/bin set-alias foo {foobin -q -l} setenv FOOENV arg1 Changes on environment variables, shell aliases, shell functions and current working directory are tracked. The following shells are supported: *sh*, *dash*, *csh*, *tcsh*, *bash*, *ksh*, *ksh93*, *zsh* and *fish*. :subcmd:`sh-to-mod` acts as a full replacement for the standalone :command:`createmodule.sh` and :command:`createmodule.py` scripts. However those two scripts are currently still provided for compatibility purpose. source-sh modulefile command ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ The :mfcmd:`source-sh` modulefile command is introduced to source environment changes done by the evaluation of a shell script passed as argument. With newly introduced :subcmd:`sh-to-mod` sub-command resulting environment changes done by script are output as modulefile commands. :mfcmd:`source-sh` applies those modulefile commands as if they were directly written in loading modulefile. :mfcmd:`source-sh` is useful for software providing a shell script for their enablement. If you want to enable such software with :command:`module` yet using shell script provided by software for this task, just write a modulefile using :mfcmd:`source-sh` command to call the shell script. Keeping the same example used to describe :subcmd:`sh-to-mod` sub-command: *foo* software provides a ``foo-setup.sh`` script for its activation. Create a modulefile ``foo/1.2`` that calls this script: .. code-block:: console $ cat /path/to/modulefiles/foo/1.2 #%Module4.6 source-sh sh /path/to/foo-1.2/foo-setup.sh arg1 Displaying this modulefile indicates the environment changes done by script: .. code-block:: console $ module display foo/1.2 ------------------------------------------------------------------- /path/to/modulefiles/foo/1.2: prepend-path PATH /path/to/foo-1.2/bin set-alias foo {foobin -q -l} setenv FOOENV arg1 ------------------------------------------------------------------- Loading the modulefile applies the environment changes seen above: .. code-block:: console $ module load -v foo/1.2 Loading foo/1.2 $ echo $FOOENV arg1 $ alias foo alias foo='foobin -q -l' Track of these changes is kept in user environment to be able to undo them when modulefile is unloaded: .. code-block:: console $ module unload -v foo/1.2 Unloading foo/1.2 $ echo $FOOENV $ alias foo bash: alias: foo: not found Changes on environment variables, shell aliases, shell functions and current working directory are tracked. The following shells are supported: *sh*, *dash*, *csh*, *tcsh*, *bash*, *ksh*, *ksh93*, *zsh* and *fish*. Querying user's name and groups membership ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Two new sub-commands are introduced for the :mfcmd:`module-info` modulefile command: ``username`` and ``usergroups``. They respectively fetch the name of the user currently running :file:`modulecmd.tcl` or the name of all the groups this user is member of. These two new modulefile commands can help to adapt code to specific users or groups. Like for instance to instantiate a modulefile for each group the user is member of: .. code-block:: console $ cat /path/to/modulefiles/foo/.modulerc #%Module4.6 foreach grp [module-info usergroups] { module-virtual foo/$grp .common } $ id -G -n grp1 grp2 grp3 $ module avail --------------- /path/to/modulefiles --------------- foo/grp1 foo/grp2 foo/grp3 ``username`` and ``usergroups`` sub-commands of :mfcmd:`module-info` modulefile command are only supported on Unix platform. Hiding modules ^^^^^^^^^^^^^^ The newly introduced :mfcmd:`module-hide` modulefile command enables to dynamically hide modulefiles, module aliases or symbolic versions specified to it: .. code-block:: console $ cat /path/to/modulefiles/bar/.modulerc #%Module4.6 module-version bar/1.0 old # hide 'old' symbolic version module-hide bar/old # hide all version 2 and above module-hide bar@2: $ cat /path/to/modulefiles/.modulerc #%Module4.6 # hide all versions of foo module module-hide foo :mfcmd:`module-hide` commands should be placed in module rc files and can leverage the `Advanced module version specifiers`_ syntax as shown in the above example. Hidden modules are excluded from available module search or module selection unless query refers to hidden module by its exact name: .. code-block:: console $ ml av --------------- /path/to/modulefiles --------------- bar/1.0 bar/2.0 $ module load -v foo ERROR: Unable to locate a modulefile for 'foo' $ module load -v foo/1.0 Loading foo/1.0 $ module avail bar/old --------------- /path/to/modulefiles --------------- bar/1.0(old) :mfcmd:`module-hide` command accepts a ``--soft`` option to apply a lighter of hiding to modules: .. code-block:: console $ cat /path/to/modulefiles/qux/.modulerc #%Module4.6 # softly hide all qux modules module-hide --soft qux The soft hiding mode enables to hide modules from full availability listing yet keeping the ability to select such module for load without having to use module exact name: .. code-block:: console $ ml av --------------- /path/to/modulefiles --------------- bar/1.0 bar/2.0 $ ml av qux --------------- /path/to/modulefiles --------------- qux/1.0 qux/2.0 $ module load -v qux Loading qux/2.0 Alternatively, a ``--hard`` option can be set on :mfcmd:`module-hide` command to ensure designated modules do not unveil even if referred by their exact name: .. code-block:: console $ cat /path/to/modulefiles/qux/.modulerc #%Module4.6 # softly hide all qux modules module-hide --soft qux # set highest version of qux hard hidden module-hide --hard qux/3.0 $ ml av qux/3.0 $ ml qux/3.0 ERROR: Unable to locate a modulefile for 'qux/3.0' Some users or groups can be set unaffected by hiding mechanism with the ``--not-user`` or ``--not-group`` options: .. code-block:: console $ cat /path/to/modulefiles/quuz/.modulerc #%Module4.6 # hiding does not apply to grp1 and grp2 groups module-hide --not-group {grp1 grp2} quuz .. code-block:: console $ id --groups --name grp1 grp7 $ ml av quuz --------------- /path/to/modulefiles --------------- quuz/1.0 quuz/2.0 $ ml -v quuz Loading quuz/2.0 Hiding mechanism can also be set effective only before or after a given date time with the ``--before`` and ``--after`` options. Accepted date time format is ``YYYY-MM-DD[THH:MM]``. .. code-block:: console $ cat /path/to/modulefiles/fum/.modulerc #%Module4.6 # hide only before a given date module-hide --hard --before 2020-09-01T12:00 fum/1.0 # hide only after a given date module-hide --hard --after 2020-09-01 fum/2.0 .. code-block:: console $ date Fri 04 Sep 2020 06:21:48 AM CEST $ ml av fum --------------- /path/to/modulefiles --------------- fum/1.0 Hidden modules can be included in available module searches if option :option:`--all`/:option:`-a` is set on :subcmd:`avail`, :subcmd:`aliases`, :subcmd:`whatis` or :subcmd:`search` sub-commands. Hard hidden modules are unaffected by this option and stay hidden. .. code-block:: console $ ml av -a --------------- /path/to/modulefiles --------------- bar/1.0(old) foo/1.0 fum/1.0 quuz/2.0 qux/2.0 bar/2.0 foo/2.0 quuz/1.0 qux/1.0 Forbidding use of modules ^^^^^^^^^^^^^^^^^^^^^^^^^ The :mfcmd:`module-forbid` modulefile command is added to dynamically forbid the evaluation of modulefiles it specifies. When forbidden, a module cannot be loaded and an access error is returned when an attempt is made to evaluate it. .. code-block:: console $ cat /path/to/modulefiles/foo/.modulerc #%Module4.6 module-forbid foo@1: $ ml foo/1.0 ERROR: Access to module 'foo/1.0' is denied $ ml No Modulefiles Currently Loaded. :mfcmd:`module-forbid` statements can be coupled with :mfcmd:`module-hide` statements to hide modules in addition to forbid their use. :mfcmd:`module-forbid` supports the ``--not-user``, ``--not-group``, ``--before`` and ``--after`` options to still allow some users or forbid modules before or after a given date time. An additional error message can be defined with the ``--message`` option to guide for instance users when they try to evaluate a forbidden module: .. code-block:: console $ cat /path/to/modulefiles/bar/.modulerc #%Module4.6 module-forbid --message {Software bar/1.0 is decommissioned, please now use\ bar/2.0} --after 2020-09-01 bar/1.0 $ ml bar/1.0 ERROR: Access to module 'bar/1.0' is denied Software bar/1.0 is decommissioned, please now use bar/2.0 When an evaluated module will soon be forbidden, a message is returned to the user to warn him/her of the near limit. An additional warning message can also be defined here with the ``--nearly-message`` option to guide users. .. code-block:: console $ cat /path/to/modulefiles/qux/.modulerc #%Module4.6 module-forbid --nearly-message {Version 1.0 will soon expire, please now use\ version 2.0} --after 2020-09-15 qux/1.0 $ date Tue 08 Sep 2020 06:49:43 AM CEST $ ml qux/1.0 Loading qux/1.0 WARNING: Access to module will be denied starting '2020-09-15' Version 1.0 will soon expire, please now use version 2.0 The range of time the *nearly forbidden* warning appears can be controlled with the ``nearly_forbidden_days`` configuration option, whose value equals to the number of days prior the module starts to be forbidden. This configuration is set to ``14`` (days) by default and this value can be controlled at :file:`configure` time with ``--with-nearly-forbidden-days`` option. When the ``nearly_forbidden_days`` configuration is set through the :subcmd:`config` sub-command, the :envvar:`MODULES_NEARLY_FORBIDDEN_DAYS` environment variable is set. Tracing module execution ^^^^^^^^^^^^^^^^^^^^^^^^ The ``trace`` verbosity is introduced between the ``verbose`` and ``debug`` levels to report details on module searches, resolutions, selections and evaluations. Trace mode can be enabled by setting the ``verbosity`` config to the ``trace`` value or by using the :option:`-T`/:option:`--trace` command-line switches. To specifically render trace messages, the ``tr`` key is added to the color palette with a default value of ``2`` (decreased intensity). .. code-block:: console $ ml -T foo Evaluate modulerc: '/path/to/modulefiles/.modulerc' Get modules: {foo} matching 'foo' in '/path/to/modulefiles' Resolve: 'foo' into 'bar' Get modules: {bar bar/1.0} matching 'bar' in '/path/to/modulefiles' Select module: 'bar/1.0' (/path/to/modulefiles/bar/1.0) matching 'bar/1.0' Loading bar/1.0 Evaluate modulefile: '/path/to/modulefiles/bar/1.0' as 'bar/1.0' Further reading --------------- To get a complete list of the changes between Modules v4.5 and v4.6, please read the :ref:`NEWS` document. Migrating from v4.4 to v4.5 =========================== This new version is backward-compatible with v4.4 and primarily fixes bugs and adds new features. New features ------------ Version 4.5 introduces new functionalities that are described in this section. ml command ^^^^^^^^^^ The ``ml`` command is added to Modules. ``ml`` is a frontend to the ``module`` command that reduces the number of characters to type to trigger module actions. With no argument provided ``ml`` is equivalent to ``module list``, ``ml foo`` corresponds to ``module load foo`` and ``ml -foo`` means ``module unload foo``:: $ ml foo $ ml Currently Loaded Modulefiles: 1) foo/2 $ ml -foo $ ml No Modulefiles Currently Loaded. Multiple modules to either load or unload can be combined on a single command. The unloads are first processed then the loads. ``ml`` accepts all command-line switches and sub-commands accepted by ``module`` command:: $ ml avail -t foo foo/1 foo/2 This handy interface has been originally developed by the `Lmod`_ project. Having this command line interface also supported on Modules helps to provide a similar user experience whatever the module implementation used. .. _Lmod: https://github.com/TACC/Lmod JSON format output ^^^^^^^^^^^^^^^^^^ The ``-j`` and ``--json`` command line switches are added for the ``avail``, ``list``, ``savelist``, ``whatis`` and ``search`` module sub-commands. When set, the output result of these sub-commands is rendered in `JSON`_ format:: $ module avail --json bar | python -mjson.tool { "/path/to/modulefiles": { "bar/2.3": { "name": "bar/2.3", "pathname": "/path/to/modulefiles/bar/2.3", "symbols": [ "default" ], "type": "modulefile" }, "bar/3.4": { "name": "bar/3.4", "pathname": "/path/to/modulefiles/bar/3.4", "symbols": [], "type": "modulefile" } } } $ ml whatis -j foo/1.2.3 | python -mjson.tool { "/path/to/modulefiles": { "foo/1.2.3": { "name": "foo/1.2.3", "whatis": [ "The foo/1.2.3 modulefile" ] } } } .. _JSON: https://tools.ietf.org/html/rfc8259 Improved Windows support ^^^^^^^^^^^^^^^^^^^^^^^^ A new option to the ``./configure`` script named ``--enable-windows-support`` is introduced to install additional files relative to the enablement of Modules on the Windows platform. When set, this option installs ``module.cmd``, ``ml.cmd`` and ``envml.cmd`` scripts in ``bindir`` and initialization script ``cmd.cmd`` in ``initdir``. With these four files the Modules installation may be used from either a Unix or a Windows platform. ``module.cmd``, ``ml.cmd`` and ``envml.cmd`` scripts respectively provide the ``module``, ``ml`` and ``envml`` commands for Windows ``cmd`` terminal shell, relying on ``modulecmd.tcl`` script which was already able to produce shell code for this Windows shell. Initialization script ``cmd.cmd`` adds the directory of ``module.cmd``, ``ml.cmd`` and ``envml.cmd`` to ``PATH``. These Windows-specific files are relocatable: ``module.cmd``, ``ml.cmd`` and ``envml.cmd`` scripts expect to find initialization script ``cmd.cmd`` in the ``init`` directory next to them (to setup Modules-specific variables in current environment) and ``cmd.cmd`` expects ``modulecmd.tcl`` to be found in ``libexec`` directory and the 3 commands in ``bin`` directory next to it. Starting from this ``4.5`` release a distribution zipball is published to install Modules on Windows. This zip archive ships an install and an uninstall scripts (``INSTALL.bat`` and ``UNINSTALL.bat``). The zipball can be built locally from Modules sources by running ``make dist-win``. The :ref:`INSTALL-win` document describes how to install Modules on Windows from the distribution zipball. Error stack trace ^^^^^^^^^^^^^^^^^ Error messages will now embed a stack trace for unknown errors to help localize the root cause of issues. This change applies to modulefile evaluation:: Loading foo/1.2 Module ERROR: add-path cannot handle path equals to separator string while executing "append-path PATH :" (file "/path/to/modulefiles/foo/1.2" line 24) Please contact A stack trace is also returned when an unknown error occurs in ``modulecmd.tcl`` script, which facilitates issue report and analysis:: $ module load bar ERROR: invalid command name "badcommand" while executing "badcommand" (procedure "module" line 14) invoked from within "module load bar" ("eval" body line 1) invoked from within "eval $execcmdlist" Please report this issue at https://github.com/cea-hpc/modules/issues Automatic default and latest symbolic versions ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ When the implicit default mechanism and the `Advanced module version specifiers`_ are both enabled, a ``default`` and a ``latest`` symbolic versions are automatically defined for each module name. This new feature gives the ability to select the highest version available for a module, without knowing beforehand this version name:: $ module load -v foo@latest Loading foo/1.10 The symbolic versions are automatically defined unless a symbolic version, an alias or a regular module version already exists for these ``default`` or ``latest`` version names. Further reading --------------- To get a complete list of the changes between Modules v4.4 and v4.5, please read the :ref:`NEWS` document. Migrating from v4.3 to v4.4 =========================== This new version is backward-compatible with v4.3 and primarily fixes bugs and adds new features. .. warning:: Modules configuration option handling has been reworked internally to provide a unified way for all options to get initialized, retrieved or set. Existing site-specific configuration script should be reviewed to make use of the new ``getConf``, ``setConf``, ``unsetConf`` and ``lappendConf`` procedures to manipulate configuration options. New features ------------ Version 4.4 introduces new functionalities that are described in this section. Specify modules in a case insensitive manner ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ The ability to match module name in a case insensitive manner has been added. This feature can be enabled at different level with the following values set to the ``icase`` configuration option: * ``never``: a case sensitive match is applied in any cases * ``search``: a case insensitive match is applied to the ``avail``, ``whatis`` and ``paths`` sub-commands * ``always``: a case insensitive match is applied to search contexts and also to the other module sub-commands and modulefile Tcl commands for the module specification they receive as argument. It can help for instance to load a module without knowing the case used to name its relative modulefile:: $ module config icase always $ module load -v mysoftware Loading MySoftware/1.0 Insensitive case match activation can be controlled at configure time with the ``--with-icase`` option, which could be passed any of the above activation levels. This option could be superseded with the ``MODULES_ICASE`` environment variable, which could be set through the **config** sub-command with the ``icase`` option. Command-line switch **--icase** supersedes in turns any other icase configurations. When this command-line switch is passed, ``icase`` mode equals ``always``. Extended default ^^^^^^^^^^^^^^^^ The extended default mechanism has been introduced to help selecting a module when only the first numbers in its version are specified. Starting portion of the version, part separated from the rest of the version string by a ``.`` character, could be used to refer to a more precise version number. This mechanism is activated through the new configuration option ``extended_default``. It enables to refer to a module named ``foo/1.2.3`` as ``foo/1.2`` or ``foo/1``:: $ module config extended_default 1 $ module load -v foo/1 Loading foo/1.2.3 When multiple versions match partial version specified and only one module should be selected, the default version (whether implicitly or explicitly defined) among matches is returned. The following example shows that ``foo/1.1.1``, the *foo* module default version, is selected when it matches query. Elsewhere the highest version (also called the latest version or the implicit default) among matching modules is returned:: $ module av foo --------------- /path/to/modulefiles --------------- foo/1.1.1(default) foo/1.2.1 foo/1.10 foo/1.1.10 foo/1.2.3 $ module load -v foo/1.1 Loading foo/1.1.1 $ module purge $ module load -v foo/1.2 Loading foo/1.2.3 $ module purge $ module load -v foo/1 Loading foo/1.1.1 In case ``implicit_default`` option is disabled and no explicit default is found among matches, an error is returned:: $ module config implicit_default 0 $ module load -v foo/1.2 ERROR: No default version defined for 'foo/1.2' When it is enabled, extended default applies everywhere a module could be specified, which means it could be used with any module sub-command or any modulefile Tcl command receiving a module specification as argument. It may help for instance to declare dependencies between modules:: $ module show bar/3 ---------------------------------------------------------- /path/to/modulefiles/bar/3.4: prereq foo/1.2 ---------------------------------------------------------- $ module load --auto bar/3 Loading bar/3.4 Loading requirement: foo/1.2.3 Extended default activation can be controlled at configure time with the ``--enable-extended-default`` option. This option could be superseded with the ``MODULES_EXTENDED_DEFAULT`` environment variable, which could be set through the **config** sub-command with the ``extended_default`` option. Advanced module version specifiers ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ The ability to specify finer constraints on module version has been added to Modules. It enables to filter the module selection to a given version list or range by specifying after the module name a version constraint prefixed by the ``@`` character. This new feature leverages the `version specifier syntax`_ of the `Spack`_ package manager as this syntax covers all the needs for a fine-grained selection of module versions. It copes very well with command-line typing, by avoiding characters having a special meaning on shells. Moreover the users of Spack that also are users of Modules may already be familiar with this syntax. .. _version specifier syntax: https://spack.readthedocs.io/en/stable/basic_usage.html#version-specifier .. _Spack: https://github.com/spack/spack The mechanism introduced here is called *advanced module version specifier* and it can be activated through the new configuration option ``advanced_version_spec``. Constraints can be expressed to refine the selection of module version to: * a single version with the ``@version`` syntax, for instance ``foo@1.2.3`` syntax will select module ``foo/1.2.3`` * a list of versions with the ``@version1,version2,...`` syntax, for instance ``foo@1.2.3,1.10`` will match modules ``foo/1.2.3`` and ``foo/1.10`` * a range of versions with the ``@version1:``, ``@:version2`` and ``@version1:version2`` syntaxes, for instance ``foo@1.2:`` will select all versions of module ``foo`` greater than or equal to ``1.2``, ``foo@:1.3`` will select all versions less than or equal to ``1.3`` and ``foo@1.2:1.3`` matches all versions between ``1.2`` and ``1.3`` including ``1.2`` and ``1.3`` versions This new feature enables for instance to list available versions of module ``foo`` higher or equal to ``1.2``:: $ module config advanced_version_spec 1 $ module av foo --------------- /path/to/modulefiles --------------- foo/1.1.1(default) foo/1.2.1 foo/1.10 foo/1.1.10 foo/1.2.3 $ module av foo@1.2: --------------- /path/to/modulefiles --------------- foo/1.2.1 foo/1.2.3 foo/1.10 Then choose to load for instance a version higher than or equal to ``1.2`` and less than or equal to ``1.3``. Default version is selected if it corresponds to a version included in the range, elsewhere the highest version (also called latest version or implicit default) is selected:: $ module load -v foo@1.2:1.3 Loading foo/1.2.3 In case ``implicit_default`` option is disabled and no explicit default is found among version specifier matches, an error is returned:: $ module config implicit_default 0 $ module load -v foo@1.2:1.3 ERROR: No default version defined for 'foo@1.2:1.3' When advanced module version specifier is enabled, it applies everywhere a module could be specified, which means it could be used with any module sub-command or any modulefile Tcl command receiving a module specification as argument. It may help for instance to declare smoother dependencies between modules:: $ module show bar@:2 ---------------------------------------------------------- /path/to/modulefiles/bar/2.3: prereq foo@1.1.10,1.2.1 ---------------------------------------------------------- $ module load --auto bar@:2 Loading bar/2.3 Loading requirement: foo/1.2.1 Advanced specification of single version or list of versions may benefit from the activation of the `Extended default`_ mechanism (range of versions natively handles abbreviated versions):: $ module config extended_default 1 $ module load -v foo@1.2 Loading foo/1.2.3 $ module unload -v foo @1.2,1.5 Unloading foo/1.2.3 Advanced module version specifier activation can be controlled at configure time with the ``--enable-advanced-version-spec`` option. This option could be superseded with the ``MODULES_ADVANCED_VERSION_SPEC`` environment variable, which could be set through the **config** sub-command with the ``advanced_version_spec`` option. Further reading --------------- To get a complete list of the changes between Modules v4.3 and v4.4, please read the :ref:`NEWS` document. Migrating from v4.2 to v4.3 =========================== This new version is backward-compatible with v4.2 and primarily fixes bugs and adds new features. New features ------------ Version 4.3 introduces new functionalities that are described in this section. Modulepath rc file ^^^^^^^^^^^^^^^^^^ A ``.modulerc`` file found at the root of an enabled modulepath directory is now evaluated when modulepath is walked through to locate modulefiles. This modulepath rc file gives for instance the ability to define module alias whose name does not correspond to any module directory in this modulepath. Thus this kind of module alias would not be found unless if it is defined at the modulepath global scope. Further I/O operations optimization ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Additional work has been performed to save a significant number of filesystem I/O operations made to search and evaluate modulefiles. When fully read, the content of a modulefile is now cached in memory to avoid new I/O operations in case this modulefile should be read one more time during the same module command evaluation. Except for ``path``, ``paths``, ``list``, ``avail`` and ``aliases`` module commands always fully read a modulefile whether its full content is needed or just its header to verify its validity. This way modulefiles are only read once on commands that first check modulefile validity then read again valid files to get their full content. Last but not least, Modules Tcl extension library is introduced to extend the Tcl language in order to provide more optimized I/O commands to read a file or a directory content than native Tcl commands do. This library is built and enabled in ``modulecmd.tcl`` script with ``--enable-libtclenvmodules`` configure argument (it is enabled by default). As this library is written in C, it must be compiled and ``--with-tcl`` or ``--with-tclinclude`` configure arguments may be used to indicate where to find Tcl development files. Modules Tcl extension library greatly reduces the number of filesystem I/O operations by removing unneeded ``ioctl``, ``fcntl`` and ``lstat`` system calls done (by Tcl ``open`` command) to read each modulefile. Directory content read is also improved by fetching hidden and regular files in one pass. Moreover ``.modulerc`` and ``.version`` read access is tested only if these files are found in the directory. Colored output ^^^^^^^^^^^^^^ The ability to graphically enhance some part of the produced output has been added to improve readability. Among others, error, warning and info message prefixes can be colored as well as modulepath, module alias and symbolic version. Color mode can be set to ``never``, ``auto`` or ``always``. When color mode is set to ``auto``, output is colored only if the standard error output channel is attached to a terminal. Default color mode could be controlled at configure time with the ``--enable-color`` and the ``--disable-color`` option, which respectively correspond to the ``auto`` and ``never`` color mode. This default mode could be superseded with the ``CLICOLOR``, ``CLICOLOR_FORCE`` and ``MODULES_COLOR`` environment variables and the ``--color`` command-line switch. Color to apply to each element can be controlled with the ``MODULES_COLORS`` environment variable or the ``--with-dark-background-colors`` and ``--with-light-background-colors`` configure options. These variable and options take as value a colon-separated list in the same fashion ``LS_COLORS`` does. In this list, output item that should be highlighted is designated by a key which is associated to a `Select Graphic Rendition (SGR) code`_. .. _Select Graphic Rendition (SGR) code: https://en.wikipedia.org/wiki/ANSI_escape_code#SGR_(Select_Graphic_Rendition)_parameters The ``MODULES_TERM_BACKGROUND`` environment variable and the ``--with-terminal-background`` configure option help Modules to determine if the color set for dark background or the color set for light background should be used to color output in case no specific color set is defined with the ``MODULES_COLORS`` variable. Output items able to be colorized and their relative key are: highlighted element (``hi``), debug information (``db``), tag separator (``se``); Error (``er``), warning (``wa``), module error (``me``) and info (``in``) message prefixes; Modulepath (``mp``), directory (``di``), module alias (``al``), module symbolic version (``sy``), module ``default`` version (``de``) and modulefile command (``cm``). For instance the default color set for a terminal with dark background is defined to:: hi=1:db=2:se=2:er=91:wa=93:me=95:in=94:mp=1;94:di=94:al=96:sy=95:de=4:cm=92 When colored output is enabled and a specific graphical rendition is defined for module *default* version, the ``default`` symbol is omitted and instead the defined graphical rendition is applied to the relative modulefile. When colored output is enabled and a specific graphical rendition is defined for module alias, the ``@`` symbol is omitted. ``CLICOLOR`` and ``CLICOLOR_FORCE`` environment variables are also honored to define color mode. The ``never`` mode is set if ``CLICOLOR`` equals to ``0``. If ``CLICOLOR`` is set to another value, it corresponds to the ``auto`` mode. The ``always`` mode is set if ``CLICOLOR_FORCE`` is set to a value different than ``0``. Color mode set with these two variables is superseded by mode set with ``MODULES_COLOR`` environment variable. Configure modulecmd with config sub-command ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ The **config** sub-command has been added to ``module`` to help getting or setting the **modulecmd.tcl** options. With no additional command-line argument, this sub-command reports the current value of all existing options with a mention to indicate if this value has been overridden from a command-line switch or from an environment variable. See the description of this sub-command in the :ref:`module(1)` man page for a complete reference on existing configuration options. Most of the options can be altered by passing the option name and a value to the sub-command. Setting an option by this mean overrides its default value, set at installation time in **modulecmd.tcl** script, by defining the environment variable which supersedes this default.:: $ module config auto_handling 1 $ module config auto_handling Modules Release 4.3.0 (2019-07-26) - Config. name ---------.- Value (set by if default overridden) --------------- auto_handling 1 (env-var) Setting options with ``module config`` could be done in the Modules initialization RC file to change default value of options when ``module`` command is initialized. When command-line switch ``--reset`` and an option name is passed to the **config** sub-command, it restores default value for configuration option by unsetting related environment variable. With command-line switch ``--dump-state``, the **config** sub-command reports, in addition to currently set options, the current state of **modulecmd.tcl** script and Modules-related environment variables. Providing the output of the ``module config --dump-state`` command when submitting an issue to the Modules project will help to analyze the situation. Control module command verbosity ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ The ability to control message verbosity has been added so ``module`` command can be configured whether it should display more or less information. Available verbosity levels from the least to the most verbose are: * ``silent``: turn off error, warning and informational messages but does not affect module command output result. * ``concise``: enable error and warning messages but disable informational messages. * ``normal``: turn on informational messages, like a report of the additional module evaluations triggered by loading or unloading modules, aborted evaluation issues or a report of each module evaluation occurring during a **restore** or **source** sub-commands. * ``verbose``: add additional informational messages, like a systematic report of the loading or unloading module evaluations. * ``debug``: print debugging messages about module command execution. Default verbosity level can be controlled at configure time with the ``--with-verbosity`` option, which could be passed any of the above level names. This default verbosity level could be superseded with the ``MODULES_VERBOSITY`` environment variable, which could be set through the **config** sub-command with the ``verbosity`` option. Command-line switches **--silent**, **--verbose** and **--debug** supersede in turns any other verbosity configuration to respectively set module command silent, verbose or in debug mode. Other new sub-commands, command-line switches and environment variables ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ * The **avail** sub-command gets two new command-line switches: **--indepth** and **--no-indepth**. These options control whether search results should recursively include or not modulefiles from directories matching search query. Shell completion scripts have been updated to complete available modulefiles in the no in depth mode. * The **MODULES_AVAIL_INDEPTH** environment variable defines if the **avail** sub-command should include or exclude by default the modulefiles from directories matching search query. Its value is superseded by the use of the **--indepth** and **--no-indepth** command-line switches. * The **clear** sub-command, which was available on Modules version 3.2, has been reintroduced. This sub-command resets the Modules runtime information but does not apply further changes to the environment at all. This sub-command now leverages the **--force** command-line switch to skip its confirmation dialog. * The **MODULES_SITECONFIG** environment variable defines an additional siteconfig script which is loaded if it exists after the siteconfig script configured at build time in ``modulecmd.tcl``. This ability is enabled by default and could be disabled with configure option ``--with-locked-configs=extra_siteconfig``. * The **MODULES_UNLOAD_MATCH_ORDER** environment variable sets whether the firstly or the lastly loaded module should be selected for unload when multiple loaded modules match unload request. Configure option ``--with-unload-match-order`` defines this setting which can be superseded by the environment variable. By default, lastly loaded module is selected and it is recommended to keep this behavior when used modulefiles express dependencies between each other. * The **MODULES_IMPLICIT_DEFAULT** environment variable sets whether an implicit default version should be defined for modules with no default version explicitly defined. When enabled, which is the default behavior, a module version is automatically selected (latest one) when the generic name of the module is passed. When implicit default is disabled and no default version is explicitly defined for a module, the name of this module to evaluate should be fully qualified elsewhere an error is returned. Configure option ``--enable-implicit-default`` defines this setting which can be superseded by the environment variable. This superseding mechanism can be disabled with configure option ``--with-locked-configs=implicit_default``. * The **MODULES_SEARCH_MATCH** environment variable defines the matching style to perform when searching for available modules. With **starts_with** value, modules whose name begins by search query string are returned. When search match style is set to **contains**, modules returned are those whose fully qualified name contains search query string. Configure option ``--with-search-match`` defines this setting which can be superseded by the environment variable, which in turns can be superseded by the **--starts-with** and **--contains** command-line switches of **avail** module sub-command. * The **MODULES_SET_SHELL_STARTUP** environment variable controls whether or not shell startup file should be set to ensure ``module`` command is defined once shell has been initialized. When enabled, the ``ENV`` and ``BASH_ENV`` environment variables are set, when ``module`` function is defined, to the Modules bourne shell initialization script. Configure options ``--enable-set-shell-startup`` and ``--disable-set-shell-startup`` define this setting which can be superseded by the environment variable. * When initializing the ``module`` command in a shell session, initialization configuration files stored in the defined configuration directory are taken into account if present instead of the configuration files stored in the initialization script directory. When they are stored in the configuration directory, these configuration files are named ``initrc`` and ``modulespath`` instead of respectively ``modulerc`` and ``.modulespath``. The location of the installation of those files can be controlled with configure option ``--with-initconf-in``, which accepts ``etcdir`` and ``initdir`` values. * The **MODULES_WA_277** environment variable helps to define an alternative ``module`` alias on Tcsh shell when set to *1*. It workarounds an issue on Tcsh history mechanism occurring with default ``module`` command alias: erroneous history entries are recorded each time the ``module`` command is called. However the alternative definition of the module alias weakens shell evaluation of the code produced by modulefiles. Characters with special meaning for Tcsh shell (like *{* and *}*) may not be used anymore in shell alias definition elsewhere the evaluation of the code produced by modulefiles will return a syntax error. Further reading --------------- To get a complete list of the changes between Modules v4.2 and v4.3, please read the :ref:`NEWS` document. Migrating from v4.1 to v4.2 =========================== This new version is backward-compatible with v4.1 and primarily fixes bugs and adds new features. New features ------------ Version 4.2 introduces new functionalities that are described in this section. .. _v42-conflict-constraints-consistency: Modulefile conflict constraints consistency ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ With the **conflict** modulefile command, a given modulefile can list the other modulefiles it conflicts with. To load this modulefile, the modulefiles it conflicts with cannot be loaded. This constraint was until now satisfied when loading the modulefile declaring the **conflict** but it vanished as soon as this modulefile was loaded. In the following example ``a`` modulefile declares a conflict with ``b``:: $ module load b a WARNING: a cannot be loaded due to a conflict. HINT: Might try "module unload b" first. $ module list Currently Loaded Modulefiles: 1) b $ module purge $ module load a b $ module list Currently Loaded Modulefiles: 1) a 2) b Consistency of the declared **conflict** is now ensured to satisfy this constraint even after the load of the modulefile declaring it. This is achieved by keeping track of the conflict constraints of the loaded modulefiles in an environment variable called ``MODULES_LMCONFLICT``:: $ module load a b ERROR: WARNING: b cannot be loaded due to a conflict. HINT: Might try "module unload a" first. $ module list Currently Loaded Modulefiles: 1) a An environment variable is used to keep track of this conflict information to proceed the same way than used to keep track of the loaded modulefiles with the ``LOADEDMODULES`` environment variable. In case a conflict constraint toward a modulefile is set by an already loaded modulefile, loading the conflicting modulefile will lead to a load evaluation attempt in order for this modulefile to get the chance to solve the constraint violation. If at the end of the load evaluation, the conflict has not been solved, modulefile load will be discarded. .. warning:: On versions ``4.2.0`` and ``4.2.1``, a conflict constraint set by an already loaded modulefile forbade the load of the conflicting modulefile. This has been changed starting version ``4.2.2`` to better cope with behaviors of previous Modules version: an evaluation attempt of the conflicting modulefile is made to give it the opportunity to solve this conflict by using **module unload** modulefile command. .. _v42-prereq-constraints-consistency: Modulefile prereq constraints consistency ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ With the **prereq** modulefile command, a given modulefile can list the other modulefiles it pre-requires. To load this modulefile, the modulefiles it pre-requires must be loaded prior its own load. This constraint was until now satisfied when loading the modulefile declaring the **prereq** but, as for the declared **conflict**, it vanished as soon as this modulefile was loaded. In the following example ``c`` modulefile declares a prereq on ``a``:: $ module load c WARNING: c cannot be loaded due to missing prereq. HINT: the following module must be loaded first: a $ module list No Modulefiles Currently Loaded. $ module load a c $ module list Currently Loaded Modulefiles: 1) a 2) c $ module unload a $ module list Currently Loaded Modulefiles: 1) c Consistency of the declared **prereq** is now ensured to satisfy this constraint even after the load of the modulefile declaring it. This is achieved, like for the conflict consistency, by keeping track of the prereq constraints of the loaded modulefiles in an environment variable called ``MODULES_LMPREREQ``:: $ module load a c $ module list Currently Loaded Modulefiles: 1) a 2) c $ module unload a ERROR: WARNING: a cannot be unloaded due to a prereq. HINT: Might try "module unload c" first. $ module list Currently Loaded Modulefiles: 1) a 2) c .. _v42-by-passing-module-constraints: By-passing module defined constraints ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ The ability to by-pass a **conflict** or a **prereq** constraint defined by modulefiles is introduced with the ``--force`` command line switch (``-f`` for short notation) for the **load**, **unload** and **switch** sub-commands. With this new command line switch, a given modulefile is loaded even if it conflicts with other loaded modulefiles or even if the modulefiles it pre-requires are not loaded. Some example reusing the same modulefiles ``a``, ``b`` and ``c`` than above:: $ module load b $ module load --force a WARNING: a conflicts with b $ module list Currently Loaded Modulefiles: 1) b 2) a $ module purge $ module load --force c WARNING: c requires a loaded $ module list Currently Loaded Modulefiles: 1) c ``--force`` also enables to unload a modulefile required by another loaded modulefiles:: $ module load a c $ module list Currently Loaded Modulefiles: 1) a 2) c $ module unload --force a WARNING: a is required by c $ module list Currently Loaded Modulefiles: 1) c In a situation where some of the loaded modulefiles have unsatisfied constraints corresponding to the **prereq** and **conflict** they declare, the **save** and **reload** sub-commands do not perform and return an error. .. _v42-automated-module-handling-mode: Automated module handling mode ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ An automatic management of the dependencies between modulefiles has been added and it is called *automated module handling mode*. This new mode consists in additional actions triggered when loading or unloading a modulefile to satisfy the constraints it declares. When loading a modulefile, following actions are triggered: * Requirement Load (ReqLo): load of the modulefiles declared as a **prereq** of the loading modulefile. * Dependent Reload (DepRe): reload of the modulefiles declaring a **prereq** onto loaded modulefile or declaring a **prereq** onto a modulefile part of this reloading batch. When unloading a modulefile, following actions are triggered: * Dependent Unload (DepUn): unload of the modulefiles declaring a non-optional **prereq** onto unloaded modulefile or declaring a non-optional **prereq** onto a modulefile part of this unloading batch. A **prereq** modulefile is considered optional if the **prereq** definition order is made of multiple modulefiles and at least one alternative modulefile is loaded. * Useless Requirement Unload (UReqUn): unload of the **prereq** modulefiles that have been automatically loaded for either the unloaded modulefile, an unloaded dependent modulefile or a modulefile part of this useless requirement unloading batch. Modulefiles are added to this unloading batch only if they are not required by any other loaded modulefiles. ``MODULES_LMNOTUASKED`` environment variable helps to keep track of these automatically loaded modulefiles and to distinguish them from modulefiles asked by user. * Dependent Reload (DepRe): reload of the modulefiles declaring a **conflict** or an optional **prereq** onto either the unloaded modulefile, an unloaded dependent or an unloaded useless requirement or declaring a **prereq** onto a modulefile part of this reloading batch. In case a loaded modulefile has some of its declared constraints unsatisfied (pre-required modulefile not loaded or conflicting modulefile loaded for instance), this loaded modulefile is excluded from the automatic reload actions described above. For the specific case of the **switch** sub-command, where a modulefile is unloaded to then load another modulefile. Dependent modulefiles to Unload are merged into the Dependent modulefiles to Reload that are reloaded after the load of the switched-to modulefile. This automated module handling mode integrates concepts (like the Dependent Reload mechanism) of the Flavours_ extension, which was designed for Modules compatibility version. As a whole, automated module handling mode can be seen as a generalization and as an expansion of the Flavours_ concepts. .. _Flavours: https://sourceforge.net/projects/flavours/ This new feature can be controlled at build time with the ``--enable-auto-handling`` configure option. This default configuration can be superseded at run-time with the ``MODULES_AUTO_HANDLING`` environment variable or the command line switches ``--auto`` and ``--no-auto``. By default, automated module handling mode is disabled and will stay so until the next major release version (5.0) where it will be enabled by default. This new feature is currently considered experimental and the set of triggered actions will be refined over the next feature releases. .. _v42-consistency-module-load-unload-commands: Consistency of module load/unload commands in modulefile ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ With the **module load** modulefile command, a given modulefile can automatically load a modulefile it pre-requires. Similarly with the **module unload** modulefile command, a given modulefile can automatically unload a modulefile it conflicts with. Both commands imply additional actions on the loaded environment (loading or unloading extra modulefiles) that should cope with the constraints defined by the loaded environment. Additionally **module load** and **module unload** modulefile commands express themselves constraints on loaded environment that should stay satisfied to ensure consistency. To ensure the consistency of **module load** modulefile command once the modulefile defining it has been loaded, this command is assimilated to a **prereq** command. Thus the defined constraint is recorded in the ``MODULES_LMPREREQ`` environment variable. Same approach is used for **module unload** modulefile command which is assimilated to a **conflict** command. Thus the defined constraint is recorded in the ``MODULES_LMCONFLICT`` environment variable. To ensure the consistency of the loaded environment, the additional actions of the **module load** and **module unload** modulefile commands have been adapted in particular situations: * When unloading modulefile, **module load** command will unload the modulefile it targets only if no other loaded modulefile requires it and if this target has not been explicitly loaded by user. * When unloading modulefile, **module unload** command does nothing as the relative conflict registered at load time ensure environment consistency and will forbid conflicting modulefile load. Please note that loading and unloading results may differ than from previous Modules version now that consistency is checked: * Modulefile targeted by a **module load** modulefile command may not be able to load due to a registered conflict in the currently loaded environment. Which in turn will break the load of the modulefile declaring the **module load** command. * Modulefile targeted by a **module unload** modulefile command may not be able to unload due to a registered prereq in the loaded environment. Which in turn will break the load of the modulefile declaring the **module unload** command. * If automated module handling mode is enabled, **module load** modulefile command is interpreted when unloading modulefile as part of the Useless Requirement Unload (UReqUn) mechanism not through modulefile evaluation. As a consequence, an error occurring when unloading the modulefile targeted by the **module load** command does not break the unload of the modulefile declaring this command. Moreover unload of the **module load** targets is done in the reverse loaded order, not in the **module load** command definition order. .. _v42-alias-symbolic-name-consistency: Modulefile alias and symbolic modulefile name consistency ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ With the **module-alias** and **module-version** modulefile commands, alternative names can be given to a modulefile. When these names are used to load for instance a modulefile, they are resolved to the modulefile they target which is then processed for the load action. Until now, the alias and symbolic version names were correctly resolved for the **load** and **unload** actions and also for the querying sub-commands (like **avail** or **whatis**). However this alternative name information vanishes once the modulefile it resolves to is loaded. As a consequence there was no consistency over these alternative designations. In the following example ``f`` modulefile declares a conflict on ``e`` alias which resolves to ``d`` modulefile:: $ module load e $ module list Currently Loaded Modulefiles: 1) d $ module info-loaded e $ module load f $ module list Currently Loaded Modulefiles: 1) d 2) f Consistency of the alternative names set on a modulefile with **module-alias** and **module-version** commands is now ensured to enable modulefile commands **prereq**, **conflict**, **is-loaded** and **module-info loaded** using these alternative designations as argument. This consistency is achieved, like for the conflict and prereq consistencies, by keeping track of the alternative names of the loaded modulefiles in an environment variable called ``MODULES_LMALTNAME``:: $ module load e $ module list Currently Loaded Modulefiles: 1) d $ module info-loaded e d $ module load f WARNING: f cannot be loaded due to a conflict. HINT: Might try "module unload e" first. $ module list Currently Loaded Modulefiles: 1) d .. _v42-variable-change-through-modulefile-evaluation: Environment variable change through modulefile evaluation context ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ All environment variable edition commands (``setenv``, ``unsetenv``, ``append-path``, ``prepend-path`` and ``remove-path``) have been updated to: * Reflect environment variable value change on the environment of the current modulefile Tcl interpreter. So using ``$env(VAR)`` will return the currently defined value for environment variable ``VAR``, not the one found prior modulefile evaluation. * Clear environment variable content instead of unsetting it on the environment of the current modulefile Tcl interpreter to avoid raising error about accessing an undefined element in ``$env()``. Code is still produced to purely unset environment variable in shell environment. Exception is made for the ``whatis`` evaluation mode: environment variables targeted by variable edition commands are not set to the defined value in the evaluation context during this ``whatis`` evaluation. These variables are only initialized to an empty value if undefined. This exception is made to save performances on this global evaluation mode. .. _v42-versioned-magic-cookie: Express Modules compatibility of modulefile with versioned magic cookie ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Any modulefile should start with the ``#%Module`` magic cookie and sometimes a version number may be placed right after this string. Until now this version number corresponded to a modulefile format version but it was never checked. Starting with this new Modules release, this version number reflects the minimum version of Modules required to interpret the modulefile. If the version number is set along the magic cookie string it is now checked and the modulefile is interpreted only if Modules version is greater or equal to this version number. For instance, if a modulefile begins with the ``#%Module4.3`` string, it can only be evaluated by Modules version 4.3 and above. Elsewhere the modulefile is ignored like files without the ``#%Module`` magic cookie set. .. _v42-module-message-report: Improved module message report ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Module sub-commands like ``load``, ``unload`` or ``switch``, may perform multiple load or unload modulefile evaluations in a row. Also these kind of evaluation modes may sometimes trigger additional load or unload evaluations, when for instance a modulefile contains a ``module load`` command. To improve the readability of the module messages produced relatively to a load or an unload evaluation, these messages are now stacked under a *Loading* or an *Unloading* message block that gathers all the messages produced for a given modulefile evaluation:: $ module load --no-auto foo Loading foo/1.2 ERROR: foo/1.2 cannot be loaded due to missing prereq. HINT: the following module must be loaded first: bar/4.5 In addition, foreground ``load``, ``unload``, ``switch`` and ``restore`` actions (ie. asked on the command-line) now report a summary of the additional load and unload evaluations that were eventually triggered in the process:: $ module load --auto foo Loading foo/1.2 Loading requirement: bar/4.5 New modulefile commands ^^^^^^^^^^^^^^^^^^^^^^^ 2 new modulefile Tcl commands have been introduced: * **set-function**: define a shell function on sh-kind and fish shells. * **unset-function**: unset a shell function on sh-kind and fish shells. Further reading --------------- To get a complete list of the changes between Modules v4.1 and v4.2, please read the :ref:`NEWS` document. Migrating from v4.0 to v4.1 =========================== This new version is backward-compatible with v4.0 and primarily fixes bugs and adds new features. New features ------------ Version 4.1 introduces a bunch of new functionalities. These major new features are described in this section. Virtual modules ^^^^^^^^^^^^^^^ A virtual module stands for a module name associated to a modulefile. The modulefile is the script interpreted when loading or unloading the virtual module which appears or can be found with its virtual name. The **module-virtual** modulefile command is introduced to give the ability to define these virtual modules. This new command takes a module name as first argument and a modulefile location as second argument:: module-virtual app/1.2.3 /path/to/virtualmod/app With this feature it is now possible to dynamically define modulefiles depending on the context. Extend module command with site-specific Tcl code ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ``module`` command can now be extended with site-specific Tcl code. ``modulecmd.tcl`` now looks at a **siteconfig.tcl** file in an ``etcdir`` defined at configure time (by default ``$prefix/etc``). If it finds this Tcl script file, it is sourced within ``modulecmd.tcl`` at the beginning of the main procedure code. ``siteconfig.tcl`` enables to supersede any global variable or procedure definitions made in ``modulecmd.tcl`` with site-specific code. A module sub-command can for instance be redefined to make it fit local needs without having to touch the main ``modulecmd.tcl``. Quarantine mechanism to protect module execution ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ To protect the module command run-time environment from side effect coming from the current environment definition a quarantine mechanism is introduced. This mechanism, sets within module function definition and shell initialization script, modifies the ``modulecmd.tcl`` run-time environment to sanitize it. The mechanism is piloted by environment variables. First of all ``MODULES_RUN_QUARANTINE``, a space-separated list of environment variable names. Every variable found in ``MODULES_RUN_QUARANTINE`` will be set in quarantine during the ``modulecmd.tcl`` run-time. Their value will be set empty or set to the value of the corresponding ``MODULES_RUNENV_`` environment variable if defined. Once ``modulecmd.tcl`` is started it restores quarantine variables to their original values. ``MODULES_RUN_QUARANTINE`` and ``MODULES_RUNENV_`` environment variables can be defined at build time by using the following configure option:: --with-quarantine-vars='VARNAME[=VALUE] ...' Quarantine mechanism is available for all supported shells except ``csh`` and ``tcsh``. Pager support ^^^^^^^^^^^^^ The informational messages Modules sends on the *stderr* channel may sometimes be quite long. This is especially the case for the avail sub-command when hundreds of modulefiles are handled. To improve the readability of those messages, *stderr* output can now be piped into a paging command. This new feature can be controlled at build time with the ``--with-pager`` and ``--with-pager-opts`` configure options. Default pager command is set to ``less`` and its relative options are by default ``-eFKRX``. Default configuration can be supersedes at run-time with ``MODULES_PAGER`` environment variables or command-line switches (``--no-pager``, ``--paginate``). .. warning:: On version ``4.1.0``, the ``PAGER`` environment variable was taken in consideration to supersede pager configuration at run-time. Since version ``4.1.1``, ``PAGER`` environment variable is ignored to avoid side effects coming from the system general pager configuration. Module function to return value in scripting languages ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ On Tcl, Perl, Python, Ruby, CMake and R scripting shells, module function was not returning value and until now an occurred error led to raising a fatal exception. To make ``module`` function more friendly to use on these scripting shells it now returns a value. False in case of error, true if everything goes well. As a consequence, returned value of a module sub-command can be checked. For instance in Python:: if module('load', 'foo'): # success else: # failure New modulefile commands ^^^^^^^^^^^^^^^^^^^^^^^ 4 new modulefile Tcl commands have been introduced: * **is-saved**: returns true or false whether a collection, corresponding to currently set collection target, exists or not. * **is-used**: returns true or false whether a given directory is currently enabled in ``MODULEPATH``. * **is-avail**: returns true or false whether a given modulefile exists in currently enabled module paths. * **module-info loaded**: returns the exact name of the modulefile currently loaded corresponding to the name argument. Multiple collections, paths or modulefiles can be passed respectively to ``is-saved``, ``is-used`` and ``is-avail`` in which case true is returned if at least one argument matches condition (acts as a OR boolean operation). No argument may be passed to ``is-loaded``, ``is-saved`` and ``is-used`` commands to return if anything is respectively loaded, saved or used. If no loaded modulefile matches the ``module-info loaded`` query, an empty string is returned. New module sub-commands ^^^^^^^^^^^^^^^^^^^^^^^ Modulefile-specific commands are sometimes wished to be used outside of a modulefile context. Especially for the commands managing path variables or commands querying current environment context. So the following modulefile-specific commands have been made reachable as module sub-commands with same arguments and properties as if called from within a modulefile: * **append-path** * **prepend-path** * **remove-path** * **is-loaded** * **info-loaded** The ``is-loaded`` sub-command returns a boolean value. Small Python example:: if module('is-loaded', 'app'): print 'app is loaded' else: print 'app not loaded' ``info-loaded`` returns a string value and is the sub-command counterpart of the ``module-info loaded`` modulefile command:: $ module load app/0.8 $ module info-loaded app app/0.8 Further reading --------------- To get a complete list of the changes between Modules v4.0 and v4.1, please read the :ref:`NEWS` document. Migrating from v3.2 to v4.0 =========================== Major evolution occurs with this v4.0 release as the traditional *module* command implemented in C is replaced by the native Tcl version. This full Tcl rewrite of the Modules package was started in 2002 and has now reached maturity to take over the binary version. This flavor change enables to refine and push forward the *module* concept. This document provides an outlook of what is changing when migrating from v3.2 to v4.0 by first describing the introduced new features. Both v3.2 and v4.0 are quite similar and transition to the new major version should be smooth. Slights differences may be noticed in a few use-cases. So the second part of the document will help to learn about them by listing the features that have been discontinued in this new major release or the features where a behavior change can be noticed. New features ------------ On its overall this major release brings a lot more robustness to the *module* command with now more than 4000 non-regression tests crafted to ensure correct operations over the time. This version 4.0 also comes with fair amount of improved functionalities. The major new features are described in this section. Additional shells supported ^^^^^^^^^^^^^^^^^^^^^^^^^^^ Modules v4 introduces support for **fish**, **lisp**, **tcl** and **R** code output. Non-zero exit code in case of error ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ All module sub-commands will now return a non-zero exit code in case of error whereas Modules v3.2 always returned zero exit code even if issue occurred. Output redirect ^^^^^^^^^^^^^^^ Traditionally the *module* command output text that should be seen by the user on *stderr* since shell commands are output to *stdout* to change shell's environment. Now on *sh*, *bash*, *ksh*, *zsh* and *fish* shells, output text is redirected to *stdout* after shell command evaluation if shell is in interactive mode. Filtering avail output ^^^^^^^^^^^^^^^^^^^^^^ Results obtained from the **avail** sub-command can now be filtered to only get the default version of each module name with use of the **--default** or **-d** command line switch. Default version is either the explicitly set default version or the highest numerically sorted modulefile or module alias if no default version set. It is also possible to filter results to only get the highest numerically sorted version of each module name with use of the **--latest** or **-L** command line switch. Extended support for module alias and symbolic version ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Module aliases are now included in the result of the **avail**, **whatis** and **apropos** sub-commands. They are displayed in the module path section where they are defined or in a *global/user modulerc* section for aliases set in user's or global ``modulerc`` file. A **@** symbol is added in parenthesis next to their name to distinguish them from modulefiles. Search may be performed with an alias or a symbolic version-name passed as argument on **avail**, **whatis** and **apropos** sub-commands. Modules v4 resolves module alias or symbolic version passed to **unload** command to then remove the loaded modulefile pointed by the mentioned alias or symbolic version. A symbolic version sets on a module alias is now propagated toward the resolution path to also apply to the relative modulefile if it still correspond to the same module name. Hiding modulefiles ^^^^^^^^^^^^^^^^^^ Visibility of modulefiles can be adapted by use of file mode bits or file ownership. If a modulefile should only be used by a given subset of persons, its mode an ownership can be tailored to provide read rights to this group of people only. In this situation, module only reports the modulefile, during an **avail** command for instance, if this modulefile can be read by the current user. These hidden modulefiles are simply ignored when walking through the modulepath content. Access issues (permission denied) occur only when trying to access directly a hidden modulefile or when accessing a symbol or an alias targeting a hidden modulefile. Improved modulefiles location ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ When looking for an implicit default in a modulefile directory, aliases are now taken into account in addition to modulefiles and directories to determine the highest numerically sorted element. Modules v4 resolves module alias or symbolic version when it points to a modulefile located in another modulepath. Access issues (permission denied) are now distinguished from find issues (cannot locate) when trying to access directly a directory or a modulefile as done on **load**, **display** or **whatis** commands. In addition, on this kind of access not readable ``.modulerc`` or ``.version`` files are ignored rather producing a missing magic cookie error. Module collection ^^^^^^^^^^^^^^^^^ Modules v4 introduces support for module *collections*. Collections describe a sequence of **module use** then **module load** commands that are interpreted by Modules to set the user environment as described by this sequence. When a collection is activated, with the **restore** sub-command, modulepaths and loaded modules are unused or unloaded if they are not part or if they are not ordered the same way as in the collection. Collections are generated by the **save** sub-command that dumps the current user environment state in terms of modulepaths and loaded modules. By default collections are saved under the ``$HOME/.module`` directory. Collections can be listed with **savelist** sub-command, displayed with **saveshow** and removed with **saverm**. Collections may be valid for a given target if they are suffixed. In this case these collections can only be restored if their suffix correspond to the current value of the ``MODULES_COLLECTION_TARGET`` environment variable. Saving collection registers the target footprint by suffixing the collection filename with ``.$MODULES_COLLECTION_TARGET``. Path variable element counter ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Modules 4 provides path element counting feature which increases a reference counter each time a given path entry is added to a given path-like environment variable. As consequence a path entry element is removed from a path-like variable only if the related element counter is equal to 1. If this counter is greater than 1, path element is kept in variable and reference counter is decreased by 1. This feature allows shared usage of particular path elements. For instance, modulefiles can append ``/usr/local/bin`` to ``PATH``, which is not unloaded until all the modulefiles that loaded it unload too. Optimized I/O operations ^^^^^^^^^^^^^^^^^^^^^^^^ Substantial work has been done to reduce the number of I/O operations done during global modulefile analysis commands like **avail** or **whatis**. ``stat``, ``open``, ``read`` and ``close`` I/O operations have been cut down to the minimum required when walking through the modulepath directories to check if files are modulefiles or to resolve module aliases. Interpretation of modulefiles and modulerc are handled by the minimum required Tcl interpreters. Which means a configured Tcl interpreter is reused as much as possible between each modulefile interpretation or between each modulerc interpretation. Sourcing modulefiles ^^^^^^^^^^^^^^^^^^^^ Modules 4 introduces the possibility to **source** a modulefile rather loading it. When it is sourced, a modulefile is interpreted into the shell environment but then it is not marked loaded in shell environment which differ from **load** sub-command. This functionality is used in shell initialization scripts once **module** function is defined. There the ``etc/modulerc`` modulefile is sourced to setup the initial state of the environment, composed of *module use* and *module load* commands. Removed features and substantial behavior changes ------------------------------------------------- Following sections provide list of Modules v3.2 features that are discontinued on Modules v4 or features with a substantial behavior change that should be taken in consideration when migrating to v4. Package initialization ^^^^^^^^^^^^^^^^^^^^^^ ``MODULESBEGINENV`` environment snapshot functionality is not supported anymore on Modules v4. Modules collection mechanism should be used instead to **save** and **restore** sets of enabled modulepaths and loaded modulefiles. Command line switches ^^^^^^^^^^^^^^^^^^^^^ Some command line switches are not supported anymore on v4.0. When still using them, a warning message is displayed and the command is ran with these unsupported switches ignored. Following command line switches are concerned: * ``--force``, ``-f`` * ``--human`` * ``--verbose``, ``-v`` * ``--silent``, ``-s`` * ``--create``, ``-c`` * ``--icase``, ``-i`` * ``--userlvl`` lvl, ``-u`` lvl Module sub-commands ^^^^^^^^^^^^^^^^^^^ During an **help** sub-command, Modules v4 does not redirect output made on stdout in *ModulesHelp* Tcl procedure to stderr. Moreover when running **help**, version 4 interprets all the content of the modulefile, then call the *ModulesHelp* procedure if it exists, whereas Modules 3.2 only interprets the *ModulesHelp* procedure and not the rest of the modulefile content. When **load** is asked on an already loaded modulefiles, Modules v4 ignores this new load order whereas v3.2 refreshed shell alias definitions found in this modulefile. When **switching** on version 4 an *old* modulefile by a *new* one, no error is raised if *old* modulefile is not currently loaded. In this situation v3.2 threw an error and abort switch action. Additionally on **switch** sub-command, *new* modulefile does not keep the position held by *old* modulefile in loaded modules list on Modules v4 as it was the case on v3.2. Same goes for path-like environment variables: replaced path component is appended to the end or prepended to the beginning of the relative path-like variable, not appended or prepended relatively to the position hold by the swapped path component. During a **switch** command, version 4 interprets the swapped-out modulefile in *unload* mode, so the sub-modulefiles loaded, with ``module load`` order in the swapped-out modulefile are also unloaded during the switch. Modules 4 provides path element counting feature which increases a reference counter each time a given path entry is added to a given environment variable. This feature also applies to the ``MODULEPATH`` environment variable. As consequence a modulepath entry element is removed from the modulepath enabled list only if the related element counter is equal to 1. When **unusing** a modulepath if its reference counter is greater than 1, modulepath is kept enabled and reference counter is decreased by 1. On Modules 3.2 paths composing the ``MODULEPATH`` environment variable may contain reference to environment variable. These variable references are resolved dynamically when ``MODULEPATH`` is looked at during module sub-command action. This feature has been discontinued on Modules v4. Following Modules sub-commands are not supported anymore on v4.0: * ``clear`` * ``update`` Modules specific Tcl commands ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Modules v4 provides path element counting feature which increases a reference counter each time a given path entry is added to a given environment variable. As a consequence a path entry element is not always removed from a path-like variable when calling to ``remove-path`` or calling to ``append-path`` or ``append-path`` at unloading time. The path element is removed only if its related element counter is equal to 1. If this counter is greater than 1, path element is kept in variable and reference counter is decreased by 1. On Modules v4, **module-info mode** returns during an **unload** sub-command the ``unload`` value instead of ``remove`` on Modules v3.2. However if *mode* is tested against ``remove`` value, true will be returned. During a **switch** sub-command on Modules v4, ``unload`` then ``load`` is returned instead of ``switch1`` then ``switch2`` then ``switch3`` on Modules v3.2. However if *mode* is tested against ``switch`` value, true will be returned. When using **set-alias**, Modules v3.2 defines a shell function when variables are in use in alias value on Bourne shell derivatives, Modules 4 always defines a shell alias never a shell function. Some Modules specific Tcl commands are not supported anymore on v4.0. When still using them, a warning message is displayed and these unsupported Tcl commands are ignored. Following Modules specific Tcl commands are concerned: * ``module-info flags`` * ``module-info trace`` * ``module-info tracepat`` * ``module-info user`` * ``module-log`` * ``module-trace`` * ``module-user`` * ``module-verbosity`` Further reading --------------- To get a complete list of the differences between Modules v3.2 and v4, please read the :ref:`diff_v3_v4` document. A significant number of issues reported for v3.2 have been closed on v4. List of these closed issues can be found at: https://github.com/cea-hpc/modules/milestone/1?closed=1