| /dports/biology/avida/avida-2.12.4-src/avida-core/source/main/ |
| H A D | cResourceCount.cc | 208 …::Setup(cWorld* world, const int& res_index, const cString& name, const double& initial, const dou… in Setup()
466 …::SetProbabilisticResource(cAvidaContext& ctx, const int& res_id, const double& initial, const dou… in SetProbabilisticResource()
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| H A D | cSpatialResCount.h | 91 void SetInitial(double initial) { m_initial = initial; } in SetInitial()
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| /dports/biology/bbmap/bbmap/current/align2/ |
| H A D | AbstractMapThread.java | 2489 int initial=ssl.size(); in removeOutOfBounds() local
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| H A D | RandomReads3.java | 665 final int initial=(bases==null ? 0 : bases.length); in addFragAdapter() local
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| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | AddAdapters.java | 376 final int remaining, initial=(bases==null ? 0 : bases.length); in addAdapter() local
454 final int initial=(bases==null ? 0 : bases.length); in addAdapter() local
587 final int initial=originalLength; in grade() local
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| /dports/biology/bbmap/bbmap/current/sketch/ |
| H A D | MergeSketch.java | 257 int initial=list.size(); in addFiles() local
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| H A D | SendSketch.java | 696 int initial=list.size(); in addFiles() local
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| H A D | SketchHeap.java | 170 final int initial=heap.size(); in toSketchArrayOld() local
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| H A D | SubSketch.java | 300 int initial=list.size(); in addFiles() local
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| /dports/biology/bbmap/bbmap/current/structures/ |
| H A D | ByteBuilder.java | 26 public ByteBuilder(int initial){ in ByteBuilder()
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| H A D | DoubleList.java | 69 public DoubleList(int initial){ in DoubleList()
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| H A D | FloatList.java | 69 public FloatList(int initial){ in FloatList()
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| H A D | IntHashMap.java | 165 private void rehashFrom(int initial){ in rehashFrom()
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| H A D | IntHashMapBinary.java | 124 private void rehashFrom(int initial){ in rehashFrom()
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| H A D | IntHashSet.java | 299 private void rehashFrom(int initial){ in rehashFrom()
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| H A D | IntList.java | 163 public IntList(int initial){ in IntList()
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| H A D | IntLongHashMap.java | 368 private void rehashFrom(int initial){ in rehashFrom()
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| H A D | LongHashMap.java | 384 private void rehashFrom(int initial){ in rehashFrom()
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| H A D | LongHashSet.java | 268 private void rehashFrom(int initial){ in rehashFrom()
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| H A D | LongList.java | 35 public LongList(int initial){ in LongList()
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| H A D | LongLongHashMap.java | 368 private void rehashFrom(int initial){ in rehashFrom()
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| /dports/biology/bbmap/bbmap/current/tax/ |
| H A D | GiToTaxid.java | 119 int initial=s.indexOf(delimiter); in parseGiNumber() local
154 int initial=s.indexOf(delimiter); in parseTaxidNumber() local
187 int initial=Tools.indexOf(s, (byte)delimiter); in parseGiNumber() local
209 int initial=Tools.indexOf(s, (byte)delimiter); in parseNcbiNumber() local
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| H A D | RenameGiToTaxid.java | 377 int initial=1, terminal=line.length; in processInner() local
523 int initial=Tools.indexOf(line, '|'); in appendHeaderLine() local
612 int initial=1, terminal=line.length; in updateHeadersFromServer_fasta() local
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| /dports/biology/bbmap/bbmap/current/var/ |
| H A D | StackVariations.java | 499 ArrayList<Varlet> initial=Varlet.fromTextFile(inName); in processFile() local
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| H A D | StackVariations2.java | 519 ArrayList<Varlet> initial=Varlet.fromTextFile(blockname); in processFile() local
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