1 /* objneten.h 2 * =========================================================================== 3 * 4 * PUBLIC DOMAIN NOTICE 5 * National Center for Biotechnology Information 6 * 7 * This software/database is a "United States Government Work" under the 8 * terms of the United States Copyright Act. It was written as part of 9 * the author's official duties as a United States Government employee and 10 * thus cannot be copyrighted. This software/database is freely available 11 * to the public for use. The National Library of Medicine and the U.S. 12 * Government have not placed any restriction on its use or reproduction. 13 * 14 * Although all reasonable efforts have been taken to ensure the accuracy 15 * and reliability of the software and data, the NLM and the U.S. 16 * Government do not and cannot warrant the performance or results that 17 * may be obtained by using this software or data. The NLM and the U.S. 18 * Government disclaim all warranties, express or implied, including 19 * warranties of performance, merchantability or fitness for any particular 20 * purpose. 21 * 22 * Please cite the author in any work or product based on this material. 23 * 24 * =========================================================================== 25 * 26 * File Name: objneten.h 27 * 28 * Author: Epstein 29 * 30 * Version Creation Date: 6/3/92 31 * 32 * $Revision: 6.0 $ 33 * 34 * File Description: Object loader interface for module NCBI-Entrez 35 * 36 * Modifications: 37 * -------------------------------------------------------------------------- 38 * Date Name Description of modification 39 * ------- ---------- ----------------------------------------------------- 40 * 8-16-94 Brylawski Added declarations for EntrezNeighborText and 41 * EntrezHierarchy loaders and structures. 42 * 43 * 11-20-94 Brylawski Moved the EntrezNeighborText structure to accentr.h 44 * to permit its use in chosen.c and netentr.c . 45 * ========================================================================== 46 * 47 * 48 * RCS Modification History: 49 * $Log: objneten.h,v $ 50 * Revision 6.0 1997/08/25 18:35:13 madden 51 * Revision changed to 6.0 52 * 53 * Revision 5.2 1997/07/29 21:24:27 vakatov 54 * [WIN32,DLL] DLL'zation of "netentr.lib" 55 * 56 * Revision 5.1 1996/08/14 19:48:21 epstein 57 * add annot get by feat ids, and also add date filtering support 58 * 59 * Revision 5.0 1996/05/28 14:10:21 ostell 60 * Set to revision 5.0 61 * 62 * Revision 4.2 1995/08/22 19:35:04 epstein 63 * add clustering support 64 * 65 * Revision 4.1 1995/08/08 15:03:11 epstein 66 * fix NetEntAsnLoad prototype per J. Zhang 67 * 68 * Revision 4.0 1995/07/26 13:54:59 ostell 69 * force revision to 4.0 70 * 71 * Revision 1.14 1995/07/11 12:30:30 epstein 72 * change CDECLs to LIBCALLs 73 * 74 * Revision 1.13 1995/07/10 19:39:04 epstein 75 * add docsumX 76 * 77 * Revision 1.12 1995/06/23 13:21:16 kans 78 * include <accentr.h> to pull in Biostruc_supported symbol 79 * 80 * Revision 1.11 1995/05/17 17:53:35 epstein 81 * add RCS log revision history 82 * 83 */ 84 85 #ifndef _NCBI_NetEntrez_ 86 #define _NCBI_NetEntrez_ 87 88 #ifndef _ASNTOOL_ 89 #include <asn.h> 90 #endif 91 92 /* accentr.h is included to define Biostruc_supported */ 93 #ifndef _ACCENTR_ 94 #include <accentr.h> 95 #endif 96 97 #undef NLM_EXTERN 98 #ifdef NLM_IMPORT 99 #define NLM_EXTERN NLM_IMPORT 100 #else 101 #define NLM_EXTERN extern 102 #endif 103 104 #ifdef __cplusplus 105 extern "C" { 106 #endif 107 108 /***************************************************************************** 109 * 110 * loader 111 * 112 *****************************************************************************/ 113 NLM_EXTERN Boolean LIBCALL NetEntAsnLoad PROTO((void)); 114 115 /***************************************************************************** 116 * 117 * internal structures for NCBI-Entrez objects 118 * 119 *****************************************************************************/ 120 121 /***************************************************************************** 122 * 123 * Entrez-ids 124 * 125 *****************************************************************************/ 126 127 128 typedef struct { 129 Int4 numid; 130 DocUidPtr ids; 131 } EntrezIds, PNTR EntrezIdsPtr; 132 133 NLM_EXTERN EntrezIdsPtr LIBCALL EntrezIdsNew PROTO((void)); 134 NLM_EXTERN EntrezIdsPtr LIBCALL EntrezIdsFree PROTO(( EntrezIdsPtr ufp)); 135 NLM_EXTERN EntrezIdsPtr LIBCALL EntrezIdsAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 136 NLM_EXTERN Boolean LIBCALL EntrezIdsAsnWrite PROTO((EntrezIdsPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 137 138 139 /***************************************************************************** 140 * 141 * Marked-link-set 142 * 143 *****************************************************************************/ 144 typedef struct { 145 LinkSetPtr link_set; 146 Int4 uids_processed; 147 EntrezIdsPtr marked_missing; 148 } MarkedLinkSet, PNTR MarkedLinkSetPtr; 149 150 151 NLM_EXTERN MarkedLinkSetPtr LIBCALL MarkedLinkSetNew PROTO((void)); 152 NLM_EXTERN MarkedLinkSetPtr LIBCALL MarkedLinkSetFree PROTO(( MarkedLinkSetPtr ufp)); 153 NLM_EXTERN MarkedLinkSetPtr LIBCALL MarkedLinkSetAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 154 NLM_EXTERN Boolean LIBCALL MarkedLinkSetAsnWrite PROTO((MarkedLinkSetPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 155 156 157 /***************************************************************************** 158 * 159 * Named-List 160 * 161 *****************************************************************************/ 162 163 typedef struct { 164 DocType type; 165 DocField fld; 166 CharPtr term; 167 EntrezIdsPtr uids; 168 } NamedList, PNTR NamedListPtr; 169 170 NLM_EXTERN NamedListPtr LIBCALL NamedListNew PROTO((void)); 171 NLM_EXTERN NamedListPtr LIBCALL NamedListFree PROTO(( NamedListPtr ufp)); 172 NLM_EXTERN NamedListPtr LIBCALL NamedListAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 173 NLM_EXTERN Boolean LIBCALL NamedListAsnWrite PROTO((NamedListPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 174 175 176 /***************************************************************************** 177 * 178 * Term-by-Page 179 * 180 *****************************************************************************/ 181 182 typedef struct { 183 DocType type; 184 DocField fld; 185 Int4 page; 186 Int4 num_pages; 187 } TermByPage, PNTR TermByPagePtr; 188 189 NLM_EXTERN TermByPagePtr LIBCALL TermByPageNew PROTO((void)); 190 NLM_EXTERN TermByPagePtr LIBCALL TermByPageFree PROTO(( TermByPagePtr ufp)); 191 NLM_EXTERN TermByPagePtr LIBCALL TermByPageAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 192 NLM_EXTERN Boolean LIBCALL TermByPageAsnWrite PROTO((TermByPagePtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 193 194 195 /***************************************************************************** 196 * 197 * Term-by-Term 198 * 199 *****************************************************************************/ 200 201 typedef struct { 202 DocType type; 203 DocField fld; 204 CharPtr term; 205 Int4 num_terms; 206 } TermByTerm, PNTR TermByTermPtr; 207 208 NLM_EXTERN TermByTermPtr LIBCALL TermByTermNew PROTO((void)); 209 NLM_EXTERN TermByTermPtr LIBCALL TermByTermFree PROTO(( TermByTermPtr ufp)); 210 NLM_EXTERN TermByTermPtr LIBCALL TermByTermAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 211 NLM_EXTERN Boolean LIBCALL TermByTermAsnWrite PROTO((TermByTermPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 212 213 /***************************************************************************** 214 * 215 * Term-Lookup 216 * 217 *****************************************************************************/ 218 219 typedef struct { 220 DocType type; 221 DocField fld; 222 CharPtr term; 223 } TermLookup, PNTR TermLookupPtr; 224 225 NLM_EXTERN TermLookupPtr LIBCALL TermLookupNew PROTO((void)); 226 NLM_EXTERN TermLookupPtr LIBCALL TermLookupFree PROTO(( TermLookupPtr ufp)); 227 NLM_EXTERN TermLookupPtr LIBCALL TermLookupAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 228 NLM_EXTERN Boolean LIBCALL TermLookupAsnWrite PROTO((TermLookupPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 229 230 231 /***************************************************************************** 232 * 233 * Term-Page-Info 234 * 235 *****************************************************************************/ 236 237 typedef struct { 238 CharPtr term; 239 Int4 spec_count; 240 Int4 tot_count; 241 } TermPageInfo, PNTR TermPageInfoPtr; 242 243 NLM_EXTERN TermPageInfoPtr LIBCALL TermPageInfoNew PROTO((void)); 244 NLM_EXTERN TermPageInfoPtr LIBCALL TermPageInfoFree PROTO(( TermPageInfoPtr ufp)); 245 NLM_EXTERN TermPageInfoPtr LIBCALL TermPageInfoAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 246 NLM_EXTERN Boolean LIBCALL TermPageInfoAsnWrite PROTO((TermPageInfoPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 247 248 249 /***************************************************************************** 250 * 251 * Term-Counts 252 * 253 *****************************************************************************/ 254 255 typedef struct { 256 Boolean found; 257 Int4 spec_count; 258 Int4 tot_count; 259 } TermCounts, PNTR TermCountsPtr; 260 261 NLM_EXTERN TermCountsPtr LIBCALL TermCountsNew PROTO((void)); 262 NLM_EXTERN TermCountsPtr LIBCALL TermCountsFree PROTO(( TermCountsPtr ufp)); 263 NLM_EXTERN TermCountsPtr LIBCALL TermCountsAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 264 NLM_EXTERN Boolean LIBCALL TermCountsAsnWrite PROTO((TermCountsPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 265 266 /***************************************************************************** 267 * 268 * Link-SetGet 269 * 270 *****************************************************************************/ 271 272 typedef struct { 273 Int4 max; /* maximum Ids to return */ 274 DocType link_to_cls; 275 DocType query_cls; 276 Boolean mark_missing; 277 Int4 query_size; 278 DocUidPtr query; 279 } LinkSetGet, PNTR LinkSetGetPtr; 280 281 NLM_EXTERN LinkSetGetPtr LIBCALL LinkSetGetNew PROTO((void)); 282 NLM_EXTERN LinkSetGetPtr LIBCALL LinkSetGetFree PROTO(( LinkSetGetPtr ufp)); 283 NLM_EXTERN LinkSetGetPtr LIBCALL LinkSetGetAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 284 NLM_EXTERN Boolean LIBCALL LinkSetGetAsnWrite PROTO((LinkSetGetPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 285 286 NLM_EXTERN DocSumPtr LIBCALL MlSumNew PROTO((void)); 287 NLM_EXTERN DocSumPtr LIBCALL MlSumFree PROTO(( DocSumPtr ufp)); 288 NLM_EXTERN DocSumPtr LIBCALL MlSumAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 289 NLM_EXTERN Boolean LIBCALL MlSumAsnWrite PROTO((DocSumPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 290 291 NLM_EXTERN DocSumPtr LIBCALL SeqSumNew PROTO((void)); 292 NLM_EXTERN DocSumPtr LIBCALL SeqSumFree PROTO(( DocSumPtr ufp)); 293 NLM_EXTERN DocSumPtr LIBCALL SeqSumAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 294 NLM_EXTERN Boolean LIBCALL SeqSumAsnWrite PROTO((DocSumPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 295 296 297 298 /***************************************************************************** 299 * 300 * EntrezDocGet 301 * 302 *****************************************************************************/ 303 304 305 typedef struct { 306 DocType cls; 307 Boolean mark_missing; 308 EntrezIdsPtr ids; 309 Int4 defer_count; 310 } EntrezDocGet, PNTR EntrezDocGetPtr; 311 312 NLM_EXTERN EntrezDocGetPtr LIBCALL EntrezDocGetNew PROTO((void)); 313 NLM_EXTERN EntrezDocGetPtr LIBCALL EntrezDocGetFree PROTO(( EntrezDocGetPtr ufp)); 314 NLM_EXTERN EntrezDocGetPtr LIBCALL EntrezDocGetAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 315 NLM_EXTERN Boolean LIBCALL EntrezDocGetAsnWrite PROTO((EntrezDocGetPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 316 317 318 /***************************************************************************** 319 * 320 * Medline-list 321 * 322 *****************************************************************************/ 323 typedef struct { 324 Int4 num; 325 MedlineEntryPtr PNTR data; /* vector */ 326 EntrezIdsPtr marked_missing; /* marked UIDs, optional */ 327 } MedlineEntryList, PNTR MedlineEntryListPtr; 328 329 330 NLM_EXTERN MedlineEntryListPtr LIBCALL MedlineEntryListNew PROTO((void)); 331 NLM_EXTERN MedlineEntryListPtr LIBCALL MedlineEntryListFree PROTO(( MedlineEntryListPtr ufp)); 332 NLM_EXTERN MedlineEntryListPtr LIBCALL MedlineEntryListAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 333 NLM_EXTERN Boolean LIBCALL MedlineEntryListAsnWrite PROTO((MedlineEntryListPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 334 335 /***************************************************************************** 336 * 337 * Ml-summary-list 338 * 339 *****************************************************************************/ 340 typedef struct { 341 Int4 num; 342 DocSumPtr PNTR data; /* vector */ 343 } MlSummaryList, PNTR MlSummaryListPtr; 344 345 346 NLM_EXTERN MlSummaryListPtr LIBCALL MlSummaryListNew PROTO((void)); 347 NLM_EXTERN MlSummaryListPtr LIBCALL MlSummaryListFree PROTO(( MlSummaryListPtr ufp)); 348 NLM_EXTERN MlSummaryListPtr LIBCALL MlSummaryListAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 349 NLM_EXTERN Boolean LIBCALL MlSummaryListAsnWrite PROTO((MlSummaryListPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 350 351 /***************************************************************************** 352 * 353 * SeqEntryGet 354 * 355 *****************************************************************************/ 356 357 typedef struct { 358 EntrezIdsPtr ids; 359 Int4 retype; 360 Boolean mark_missing; 361 } EntrezSeqGet, PNTR EntrezSeqGetPtr; 362 363 NLM_EXTERN EntrezSeqGetPtr LIBCALL EntrezSeqGetNew PROTO((void)); 364 NLM_EXTERN EntrezSeqGetPtr LIBCALL EntrezSeqGetFree PROTO(( EntrezSeqGetPtr ufp)); 365 NLM_EXTERN EntrezSeqGetPtr LIBCALL EntrezSeqGetAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 366 NLM_EXTERN Boolean LIBCALL EntrezSeqGetAsnWrite PROTO((EntrezSeqGetPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 367 368 /***************************************************************************** 369 * 370 * Seq-summary-list 371 * 372 *****************************************************************************/ 373 typedef struct { 374 Int4 num; 375 DocSumPtr PNTR data; /* vector */ 376 } SeqSummaryList, PNTR SeqSummaryListPtr; 377 378 379 NLM_EXTERN SeqSummaryListPtr LIBCALL SeqSummaryListNew PROTO((void)); 380 NLM_EXTERN SeqSummaryListPtr LIBCALL SeqSummaryListFree PROTO(( SeqSummaryListPtr ufp)); 381 NLM_EXTERN SeqSummaryListPtr LIBCALL SeqSummaryListAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 382 NLM_EXTERN Boolean LIBCALL SeqSummaryListAsnWrite PROTO((SeqSummaryListPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 383 384 385 /***************************************************************************** 386 * 387 * Seq-entry-list 388 * 389 *****************************************************************************/ 390 typedef struct { 391 Int4 num; 392 SeqEntryPtr PNTR data; /* vector */ 393 EntrezIdsPtr marked_missing; /* marked UIDs, optional */ 394 } PNTR SeqEntryListPtr; 395 /* note that SeqEntryList is not provided because the name conflicted with */ 396 /* the name of a function on sequtil.c; the typedef was not needed anyhow */ 397 398 399 NLM_EXTERN SeqEntryListPtr LIBCALL SeqEntryListNew PROTO((void)); 400 NLM_EXTERN SeqEntryListPtr LIBCALL SeqEntryListFree PROTO(( SeqEntryListPtr ufp)); 401 NLM_EXTERN SeqEntryListPtr LIBCALL SeqEntryListAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 402 NLM_EXTERN Boolean LIBCALL SeqEntryListAsnWrite PROTO((SeqEntryListPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 403 404 405 406 #ifdef Biostruc_supported 407 408 /***************************************************************************** 409 * 410 * Biostruc-list 411 * 412 *****************************************************************************/ 413 typedef struct { 414 Int4 num; 415 BiostrucPtr PNTR data; /* vector */ 416 EntrezIdsPtr marked_missing; /* marked UIDs, optional */ 417 } BiostrucList, PNTR BiostrucListPtr; 418 419 420 NLM_EXTERN BiostrucListPtr LIBCALL BiostrucListNew PROTO((void)); 421 NLM_EXTERN BiostrucListPtr LIBCALL BiostrucListFree PROTO(( BiostrucListPtr ufp)); 422 NLM_EXTERN BiostrucListPtr LIBCALL BiostrucListAsnRead PROTO((AsnIoPtr aip, AsnTypePtr atp)); 423 NLM_EXTERN Boolean LIBCALL BiostrucListAsnWrite PROTO((BiostrucListPtr ufp, AsnIoPtr aip, AsnTypePtr atp)); 424 425 #endif /* Biostruc_supported */ 426 427 /************************************************** 428 * 429 * EntrezNeighborText 430 * 431 **************************************************/ 432 433 434 NLM_EXTERN EntrezNeighborTextPtr LIBCALL EntrezNeighborTextAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); 435 NLM_EXTERN Boolean LIBCALL EntrezNeighborTextAsnWrite PROTO (( EntrezNeighborTextPtr , AsnIoPtr, AsnTypePtr)); 436 437 438 /************************************************** 439 * 440 * ChildLink 441 * 442 *************************************************/ 443 typedef struct struct_Child_Link { 444 struct struct_Child_Link PNTR next; 445 CharPtr name; 446 Boolean isLeafNode; 447 Int4 special; 448 Int4 total; 449 } ChildLink, PNTR ChildLinkPtr; 450 451 452 453 NLM_EXTERN EntrezHierarchyChildPtr LIBCALL EntrezHierarchyChildFree PROTO ((EntrezHierarchyChildPtr )); 454 NLM_EXTERN EntrezHierarchyChildPtr LIBCALL EntrezHierarchyChildNew PROTO (( void )); 455 NLM_EXTERN EntrezHierarchyChildPtr LIBCALL EntrezHierarchyChildAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); 456 NLM_EXTERN Boolean LIBCALL EntrezHierarchyChildAsnWrite PROTO (( EntrezHierarchyChildPtr ,AsnIoPtr, AsnTypePtr)); 457 458 NLM_EXTERN EntrezHierarchyPtr LIBCALL EntrezHierarchyFree PROTO ((EntrezHierarchyPtr )); 459 NLM_EXTERN EntrezHierarchyPtr LIBCALL EntrezHierarchyNew PROTO (( void )); 460 NLM_EXTERN EntrezHierarchyPtr LIBCALL EntrezHierarchyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); 461 NLM_EXTERN Boolean LIBCALL EntrezHierarchyAsnWrite PROTO (( EntrezHierarchyPtr, AsnIoPtr, AsnTypePtr)); 462 463 464 /************************************************** 465 * 466 * EntrezBlastreq 467 * 468 **************************************************/ 469 typedef struct struct_Entrez_blastreq { 470 Uint4 OBbits__; 471 BioseqPtr bsp; 472 DocType bsp_database; 473 CharPtr program; 474 CharPtr database; 475 CharPtr options; 476 Uint1 showprogress; 477 } EntrezBlastreq, PNTR EntrezBlastreqPtr; 478 479 480 NLM_EXTERN EntrezBlastreqPtr LIBCALL EntrezBlastreqFree PROTO ((EntrezBlastreqPtr )); 481 NLM_EXTERN EntrezBlastreqPtr LIBCALL EntrezBlastreqNew PROTO (( void )); 482 NLM_EXTERN EntrezBlastreqPtr LIBCALL EntrezBlastreqAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); 483 NLM_EXTERN Boolean LIBCALL EntrezBlastreqAsnWrite PROTO (( EntrezBlastreqPtr , AsnIoPtr, AsnTypePtr)); 484 485 486 487 /************************************************** 488 * 489 * EntrezExtraInfo 490 * 491 **************************************************/ 492 typedef struct struct_Entrez_extra_info { 493 Uint4 OBbits__; 494 Int4 maxlinks; 495 Uint1 canneighbortext; 496 Uint1 expanded_medline; 497 Uint1 canblast; 498 } EntrezExtraInfo, PNTR EntrezExtraInfoPtr; 499 500 501 NLM_EXTERN EntrezExtraInfoPtr LIBCALL EntrezExtraInfoFree PROTO ((EntrezExtraInfoPtr )); 502 NLM_EXTERN EntrezExtraInfoPtr LIBCALL EntrezExtraInfoNew PROTO (( void )); 503 NLM_EXTERN EntrezExtraInfoPtr LIBCALL EntrezExtraInfoAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); 504 NLM_EXTERN Boolean LIBCALL EntrezExtraInfoAsnWrite PROTO (( EntrezExtraInfoPtr , AsnIoPtr, AsnTypePtr)); 505 506 typedef struct struct_New_summary_List { 507 Int4 num; 508 DocType type; 509 DocSumPtr PNTR data; 510 } NewSummaryList, PNTR NewSummaryListPtr; 511 512 NLM_EXTERN NewSummaryListPtr LIBCALL NewSummaryListFree PROTO ((NewSummaryListPtr )); 513 NLM_EXTERN NewSummaryListPtr LIBCALL NewSummaryListNew PROTO (( void )); 514 NLM_EXTERN NewSummaryListPtr LIBCALL NewSummaryListAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); 515 NLM_EXTERN Boolean LIBCALL NewSummaryListAsnWrite PROTO (( NewSummaryListPtr , AsnIoPtr, AsnTypePtr)); 516 517 518 /************************************************** 519 * 520 * ClusterArticles 521 * 522 **************************************************/ 523 typedef struct struct_Cluster_articles { 524 Uint4 OBbits__; 525 EntrezIdsPtr ids; 526 Int4 fld; 527 Int4 min_cluster; 528 Int4 max_cluster; 529 Int4 max_terms; 530 } ClusterArticles, PNTR ClusterArticlesPtr; 531 532 533 NLM_EXTERN ClusterArticlesPtr LIBCALL ClusterArticlesFree PROTO ((ClusterArticlesPtr )); 534 NLM_EXTERN ClusterArticlesPtr LIBCALL ClusterArticlesNew PROTO (( void )); 535 NLM_EXTERN ClusterArticlesPtr LIBCALL ClusterArticlesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); 536 NLM_EXTERN Boolean LIBCALL ClusterArticlesAsnWrite PROTO (( ClusterArticlesPtr , AsnIoPtr, AsnTypePtr)); 537 538 539 540 541 /************************************************** 542 * 543 * ClusterResp 544 * 545 **************************************************/ 546 typedef struct struct_Cluster_resp { 547 Uint4 OBbits__; 548 Int4 count; 549 ValNodePtr terms; 550 ValNodePtr term_counts; 551 } ClusterResp, PNTR ClusterRespPtr; 552 553 554 NLM_EXTERN ClusterRespPtr LIBCALL ClusterRespFree PROTO ((ClusterRespPtr )); 555 NLM_EXTERN ClusterRespPtr LIBCALL ClusterRespNew PROTO (( void )); 556 NLM_EXTERN ClusterRespPtr LIBCALL ClusterRespAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); 557 NLM_EXTERN Boolean LIBCALL ClusterRespAsnWrite PROTO (( ClusterRespPtr , AsnIoPtr, AsnTypePtr)); 558 559 560 561 /************************************************** 562 * 563 * DateConstraints 564 * 565 **************************************************/ 566 typedef struct struct_Date_constraints { 567 Int4 count; 568 struct struct_Date_vector PNTR date_vec; 569 } DateConstraints, PNTR DateConstraintsPtr; 570 571 572 NLM_EXTERN DateConstraintsPtr LIBCALL DateConstraintsFree PROTO ((DateConstraintsPtr )); 573 NLM_EXTERN DateConstraintsPtr LIBCALL DateConstraintsNew PROTO (( void )); 574 NLM_EXTERN DateConstraintsPtr LIBCALL DateConstraintsAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); 575 NLM_EXTERN Boolean LIBCALL DateConstraintsAsnWrite PROTO (( DateConstraintsPtr , AsnIoPtr, AsnTypePtr)); 576 577 578 579 /************************************************** 580 * 581 * DateVector 582 * 583 **************************************************/ 584 typedef struct struct_Date_vector { 585 struct struct_Date_vector PNTR next; 586 DatePtr begin_date; 587 DatePtr end_date; 588 CharPtr field_abbr; 589 } DateVector, PNTR DateVectorPtr; 590 591 592 NLM_EXTERN DateVectorPtr LIBCALL DateVectorFree PROTO ((DateVectorPtr )); 593 NLM_EXTERN DateVectorPtr LIBCALL DateVectorNew PROTO (( void )); 594 NLM_EXTERN DateVectorPtr LIBCALL DateVectorAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); 595 NLM_EXTERN Boolean LIBCALL DateVectorAsnWrite PROTO (( DateVectorPtr , AsnIoPtr, AsnTypePtr)); 596 597 598 599 /************************************************** 600 * 601 * GetByFid 602 * 603 **************************************************/ 604 typedef struct struct_Get_by_fid { 605 Int4 mmdbid; 606 Int4 feature_id; 607 Int4 feature_set_id; 608 } GetByFid, PNTR GetByFidPtr; 609 610 611 NLM_EXTERN GetByFidPtr LIBCALL GetByFidFree PROTO ((GetByFidPtr )); 612 NLM_EXTERN GetByFidPtr LIBCALL GetByFidNew PROTO (( void )); 613 NLM_EXTERN GetByFidPtr LIBCALL GetByFidAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); 614 NLM_EXTERN Boolean LIBCALL GetByFidAsnWrite PROTO (( GetByFidPtr , AsnIoPtr, AsnTypePtr)); 615 616 617 618 /************************************************** 619 * 620 * GetFeatIds 621 * 622 **************************************************/ 623 typedef struct struct_Get_feat_ids { 624 Int4 mmdbid; 625 Int4 feature_type; 626 Int4 feature_set_id; 627 } GetFeatIds, PNTR GetFeatIdsPtr; 628 629 630 NLM_EXTERN GetFeatIdsPtr LIBCALL GetFeatIdsFree PROTO ((GetFeatIdsPtr )); 631 NLM_EXTERN GetFeatIdsPtr LIBCALL GetFeatIdsNew PROTO (( void )); 632 NLM_EXTERN GetFeatIdsPtr LIBCALL GetFeatIdsAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); 633 NLM_EXTERN Boolean LIBCALL GetFeatIdsAsnWrite PROTO (( GetFeatIdsPtr , AsnIoPtr, AsnTypePtr)); 634 635 #ifdef __cplusplus 636 } 637 #endif 638 639 #undef NLM_EXTERN 640 #ifdef NLM_EXPORT 641 #define NLM_EXTERN NLM_EXPORT 642 #else 643 #define NLM_EXTERN 644 #endif 645 646 #endif 647