Searched defs:ReadMatch (Results 1 – 4 of 4) sorted by relevance
234 struct ReadMatch struct236 typedef typename MakeSigned_<TGPos_>::Type TGPos;238 unsigned gseqNo; // genome seqNo239 unsigned rseqNo; // read seqNo240 TGPos gBegin; // begin position of the match in the genome241 TGPos gEnd; // end position of the match in the genome244 int mateDelta:24; // outer coordinate delta to the other mate 245 int pairScore:8; // combined score of both mates247 unsigned short editDist; // Levenshtein distance249 short mScore;[all …]
243 struct ReadMatch struct245 typedef typename MakeSigned_<TGPos_>::Type TGPos;247 unsigned gseqNo; // genome seqNo248 unsigned rseqNo; // read seqNo249 TGPos gBegin; // begin position of the match in the genome250 TGPos gEnd; // end position of the match in the genome254 int pairScore:8; // combined score of both mates256 unsigned short editDist; // Levenshtein distance258 short mScore;259 short seedEditDist:8; [all …]
263 struct ReadMatch struct265 typedef typename MakeSigned_<TGPos_>::Type TGPos;267 unsigned gseqNo; // genome seqNo268 unsigned rseqNo; // read seqNo269 TGPos gBegin; // begin position of the match in the genome270 TGPos gEnd; // end position of the match in the genome274 unsigned pairScore:9; // combined score of both mates max 256276 unsigned short editDist; // Levenshtein distance278 short mScore;279 short seedEditDist:8; [all …]
252 struct ReadMatch struct254 typedef typename MakeSigned_<TGPos_>::Type TGPos;256 unsigned gseqNo; // genome seqNo257 unsigned rseqNo; // read seqNo258 TGPos gBegin; // begin position of the match in the genome259 TGPos gEnd; // end position of the match in the genome262 int mateDelta:24; // outer coordinate delta to the other mate 263 int pairScore:8; // combined score of both mates265 unsigned short editDist; // Levenshtein distance267 short mScore;[all …]