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Searched defs:TFinder (Results 1 – 25 of 26) sorted by relevance

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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/swift_local/
H A Dtest_find_swift.cpp64 typedef Finder<DnaString, Swift<SwiftLocal> > TFinder; in testOneLocalSwiftHit() typedef
80 typedef Finder<DnaString, Swift<SwiftLocal> > TFinder; in testOneLocalSwiftHit2() typedef
96 typedef Finder<DnaString, Swift<SwiftLocal> > TFinder; in testOneLocalSwiftHitStringSet() typedef
113 typedef Finder<DnaString, Swift<SwiftLocal> > TFinder; in testOneLocalSwiftHitBucketBorder() typedef
132 typedef Finder<DnaString, Swift<SwiftLocal> > TFinder; in testOneLocalSwiftHitNegDiag() typedef
150 typedef Finder<DnaString, Swift<SwiftLocal> > TFinder; in testLocalSwiftTwoPatterns() typedef
171 typedef Finder<DnaString, Swift<SwiftLocal> > TFinder; in testLocalSwiftLongPatterns() typedef
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/index/
H A Dtest_find_backtracking.h137 typedef Finder_<TTextIndex, TPatternIndex, TBacktracking> TFinder; in SEQAN_DEFINE_TEST() typedef
184 typedef Finder_<TTextIndex, TPatternIndex, TBacktracking> TFinder; in SEQAN_DEFINE_TEST() typedef
227 typedef Finder_<TTextIndex, TPattern, TBacktracking> TFinder; in SEQAN_DEFINE_TEST() typedef
261 typedef Finder_<TTextIndex, TPattern, TBacktracking> TFinder; in SEQAN_DEFINE_TEST() typedef
H A Dtest_index_finder.cpp57 typedef Finder<TIndex> TFinder; typedef in IndexFinderTest
/dports/biology/seqan1/seqan-1.3.1/demos/howto/
H A Dfilter_similar_sequences.cpp22 typedef Finder<TReadSeq, Swift<SwiftSemiGlobal> > TFinder; in main() typedef
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/howto/
H A Dfilter_similar_sequences.cpp26 typedef Finder<TReadSeq, Swift<SwiftSemiGlobal> > TFinder; in main() typedef
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/
H A Dlocal_alignment_banded_waterman_eggert_impl.h77 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWaterman() typedef
212 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanDeclump() typedef
378 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanTrace() typedef
482 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef
H A Dlocal_alignment_waterman_eggert_impl.h146 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef
181 typedef LocalAlignmentFinder<TScoreValue> TFinder; in getScore() typedef
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/
H A Dlocal_alignment_banded_waterman_eggert_impl.h77 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWaterman() typedef
212 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanDeclump() typedef
378 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanTrace() typedef
482 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef
H A Dlocal_alignment_waterman_eggert_impl.h146 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef
181 typedef LocalAlignmentFinder<TScoreValue> TFinder; in getScore() typedef
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/
H A Dlocal_alignment_banded_waterman_eggert_impl.h77 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWaterman() typedef
212 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanDeclump() typedef
378 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanTrace() typedef
482 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef
H A Dlocal_alignment_waterman_eggert_impl.h146 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef
181 typedef LocalAlignmentFinder<TScoreValue> TFinder; in getScore() typedef
/dports/biology/seqan1/seqan-1.3.1/seqan/align/
H A Dalign_local_dynprog_banded.h52 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef
85 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanTrace() typedef
186 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanDeclump() typedef
345 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWaterman() typedef
H A Dalign_local_dynprog.h188 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef
219 typedef LocalAlignmentFinder<TScoreValue> TFinder; in getScore() typedef
724 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _smithWaterman() typedef
/dports/biology/seqan1/seqan-1.3.1/demos/tutorial/read_mapping/
H A Dminimapper.cpp49 typedef Finder<TContigSeq, Swift<SwiftSemiGlobal> > TFinder; typedef
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/unassigned_or_unused/
H A Dminimapper.cpp51 typedef Finder<TContigSeq, Swift<SwiftSemiGlobal> > TFinder; typedef
/dports/biology/seqan1/seqan-1.3.1/demos/
H A Dlagan.cpp35 typedef Finder<TQGramIndex> TFinder; in laganChaining() typedef
/dports/astro/xplanet/xplanet-1.3.1/src/libprojection/
H A DProjectionIcosagnomonic.h169 TList TFinder[FINDCOLS][FINDROWS]; variable
/dports/biology/seqan1/seqan-1.3.1/seqan/find/
H A Dfind_horspool.h306 typedef Finder<String<TValue, FileReader<TFormat, TFile, FileReaderTSpec> >, TFinderSpec > TFinder; in _findHorspool() typedef
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/find/
H A Dfind_horspool.h300 …typedef Finder<String<TValue, FileReader<TFormat, TFile, FileReaderTSpec> >, TFinderSpec > TFinder; in _findHorspool() typedef
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/find/
H A Dfind_horspool.h300 …typedef Finder<String<TValue, FileReader<TFormat, TFile, FileReaderTSpec> >, TFinderSpec > TFinder; in _findHorspool() typedef
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/find/
H A Dfind_horspool.h309 …typedef Finder<String<TValue, FileReader<TFormat, TFile, FileReaderTSpec> >, TFinderSpec > TFinder; in _findHorspool() typedef
/dports/biology/seqan1/seqan-1.3.1/apps/stellar/
H A Dstellar.cpp46 typedef Finder<TSequence, Swift<SwiftLocal> > TFinder; in _stellarOnOne() typedef
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/stellar/
H A Dstellar.cpp51 typedef Finder<TSequence, Swift<SwiftLocal> > TFinder; in _stellarOnOne() typedef
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/gustaf/
H A Dstellar_routines.h154 typedef Finder<TSequence, Swift<SwiftLocal> > TFinder; in _getStellarMatches() typedef
/dports/devel/py-pip-shims/pip_shims-0.6.0/src/pip_shims/
H A Dcompat.py55 TFinder = TypeVar("TFinder") variable

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