/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/swift_local/ |
H A D | test_find_swift.cpp | 64 typedef Finder<DnaString, Swift<SwiftLocal> > TFinder; in testOneLocalSwiftHit() typedef 80 typedef Finder<DnaString, Swift<SwiftLocal> > TFinder; in testOneLocalSwiftHit2() typedef 96 typedef Finder<DnaString, Swift<SwiftLocal> > TFinder; in testOneLocalSwiftHitStringSet() typedef 113 typedef Finder<DnaString, Swift<SwiftLocal> > TFinder; in testOneLocalSwiftHitBucketBorder() typedef 132 typedef Finder<DnaString, Swift<SwiftLocal> > TFinder; in testOneLocalSwiftHitNegDiag() typedef 150 typedef Finder<DnaString, Swift<SwiftLocal> > TFinder; in testLocalSwiftTwoPatterns() typedef 171 typedef Finder<DnaString, Swift<SwiftLocal> > TFinder; in testLocalSwiftLongPatterns() typedef
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/index/ |
H A D | test_find_backtracking.h | 137 typedef Finder_<TTextIndex, TPatternIndex, TBacktracking> TFinder; in SEQAN_DEFINE_TEST() typedef 184 typedef Finder_<TTextIndex, TPatternIndex, TBacktracking> TFinder; in SEQAN_DEFINE_TEST() typedef 227 typedef Finder_<TTextIndex, TPattern, TBacktracking> TFinder; in SEQAN_DEFINE_TEST() typedef 261 typedef Finder_<TTextIndex, TPattern, TBacktracking> TFinder; in SEQAN_DEFINE_TEST() typedef
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H A D | test_index_finder.cpp | 57 typedef Finder<TIndex> TFinder; typedef in IndexFinderTest
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/dports/biology/seqan1/seqan-1.3.1/demos/howto/ |
H A D | filter_similar_sequences.cpp | 22 typedef Finder<TReadSeq, Swift<SwiftSemiGlobal> > TFinder; in main() typedef
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/howto/ |
H A D | filter_similar_sequences.cpp | 26 typedef Finder<TReadSeq, Swift<SwiftSemiGlobal> > TFinder; in main() typedef
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/ |
H A D | local_alignment_banded_waterman_eggert_impl.h | 77 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWaterman() typedef 212 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanDeclump() typedef 378 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanTrace() typedef 482 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef
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H A D | local_alignment_waterman_eggert_impl.h | 146 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef 181 typedef LocalAlignmentFinder<TScoreValue> TFinder; in getScore() typedef
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/ |
H A D | local_alignment_banded_waterman_eggert_impl.h | 77 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWaterman() typedef 212 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanDeclump() typedef 378 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanTrace() typedef 482 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef
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H A D | local_alignment_waterman_eggert_impl.h | 146 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef 181 typedef LocalAlignmentFinder<TScoreValue> TFinder; in getScore() typedef
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
H A D | local_alignment_banded_waterman_eggert_impl.h | 77 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWaterman() typedef 212 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanDeclump() typedef 378 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanTrace() typedef 482 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef
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H A D | local_alignment_waterman_eggert_impl.h | 146 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef 181 typedef LocalAlignmentFinder<TScoreValue> TFinder; in getScore() typedef
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/dports/biology/seqan1/seqan-1.3.1/seqan/align/ |
H A D | align_local_dynprog_banded.h | 52 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef 85 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanTrace() typedef 186 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWatermanDeclump() typedef 345 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _alignBandedSmithWaterman() typedef
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H A D | align_local_dynprog.h | 188 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _initLocalAlignmentFinder() typedef 219 typedef LocalAlignmentFinder<TScoreValue> TFinder; in getScore() typedef 724 typedef LocalAlignmentFinder<TScoreValue> TFinder; in _smithWaterman() typedef
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/dports/biology/seqan1/seqan-1.3.1/demos/tutorial/read_mapping/ |
H A D | minimapper.cpp | 49 typedef Finder<TContigSeq, Swift<SwiftSemiGlobal> > TFinder; typedef
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/unassigned_or_unused/ |
H A D | minimapper.cpp | 51 typedef Finder<TContigSeq, Swift<SwiftSemiGlobal> > TFinder; typedef
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/dports/biology/seqan1/seqan-1.3.1/demos/ |
H A D | lagan.cpp | 35 typedef Finder<TQGramIndex> TFinder; in laganChaining() typedef
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/dports/astro/xplanet/xplanet-1.3.1/src/libprojection/ |
H A D | ProjectionIcosagnomonic.h | 169 TList TFinder[FINDCOLS][FINDROWS]; variable
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/dports/biology/seqan1/seqan-1.3.1/seqan/find/ |
H A D | find_horspool.h | 306 typedef Finder<String<TValue, FileReader<TFormat, TFile, FileReaderTSpec> >, TFinderSpec > TFinder; in _findHorspool() typedef
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/find/ |
H A D | find_horspool.h | 300 …typedef Finder<String<TValue, FileReader<TFormat, TFile, FileReaderTSpec> >, TFinderSpec > TFinder; in _findHorspool() typedef
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/find/ |
H A D | find_horspool.h | 300 …typedef Finder<String<TValue, FileReader<TFormat, TFile, FileReaderTSpec> >, TFinderSpec > TFinder; in _findHorspool() typedef
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/find/ |
H A D | find_horspool.h | 309 …typedef Finder<String<TValue, FileReader<TFormat, TFile, FileReaderTSpec> >, TFinderSpec > TFinder; in _findHorspool() typedef
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/dports/biology/seqan1/seqan-1.3.1/apps/stellar/ |
H A D | stellar.cpp | 46 typedef Finder<TSequence, Swift<SwiftLocal> > TFinder; in _stellarOnOne() typedef
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/stellar/ |
H A D | stellar.cpp | 51 typedef Finder<TSequence, Swift<SwiftLocal> > TFinder; in _stellarOnOne() typedef
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/gustaf/ |
H A D | stellar_routines.h | 154 typedef Finder<TSequence, Swift<SwiftLocal> > TFinder; in _getStellarMatches() typedef
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/dports/devel/py-pip-shims/pip_shims-0.6.0/src/pip_shims/ |
H A D | compat.py | 55 TFinder = TypeVar("TFinder") variable
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