| /dports/biology/seqan1/seqan-1.3.1/demos/howto/ |
| H A D | filter_similar_sequences.cpp | 18 typedef FragmentStore<>::TReadSeqStore TReadSeqStore; in main() typedef
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/howto/ |
| H A D | filter_similar_sequences.cpp | 22 typedef FragmentStore<>::TReadSeqStore TReadSeqStore; in main() typedef
|
| /dports/biology/seqan1/seqan-1.3.1/demos/tutorial/read_mapping/ |
| H A D | minimapper.cpp | 42 typedef FragmentStore<>::TReadSeqStore TReadSeqStore; typedef
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/unassigned_or_unused/ |
| H A D | minimapper.cpp | 44 typedef FragmentStore<>::TReadSeqStore TReadSeqStore; typedef
|
| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/consensus/ |
| H A D | overlap_info_computation.h | 174 typedef typename TFragmentStore::TReadSeqStore const TReadSeqStore; in computeOverlapInfo() typedef
342 typedef typename TFragmentStore::TReadSeqStore const TReadSeqStore; in buildAllToAllOverlapInfos() typedef
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/consensus/ |
| H A D | overlap_info_computation.h | 174 typedef typename TFragmentStore::TReadSeqStore const TReadSeqStore; in computeOverlapInfo() typedef
342 typedef typename TFragmentStore::TReadSeqStore const TReadSeqStore; in buildAllToAllOverlapInfos() typedef
|
| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/consensus/ |
| H A D | overlap_info_computation.h | 174 typedef typename TFragmentStore::TReadSeqStore const TReadSeqStore; in computeOverlapInfo() typedef
342 typedef typename TFragmentStore::TReadSeqStore const TReadSeqStore; in buildAllToAllOverlapInfos() typedef
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/realign/ |
| H A D | test_realign.cpp | 52 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; in addGaps() typedef
600 typedef typename seqan::FragmentStore<>::TReadSeqStore TReadSeqStore; in SEQAN_DEFINE_TEST() typedef
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/store/ |
| H A D | store_all.h | 451 …adSeq, TReadSeqStoreSpec> TReadSeqStore; typedef
|
| /dports/biology/seqan1/seqan-1.3.1/apps/rabema/ |
| H A D | build_gold_standard.h | 475 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; in matchesToErrorFunction() typedef
|
| H A D | verification.h | 254 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; in verifyMatchesToErrorFunctionResults() typedef
|
| H A D | evaluation.h | 164 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; in bestScoreForAligned() typedef
|
| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/store/ |
| H A D | store_all.h | 451 …adSeq, TReadSeqStoreSpec> TReadSeqStore; typedef
|
| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/store/ |
| H A D | store_all.h | 451 …adSeq, TReadSeqStoreSpec> TReadSeqStore; typedef
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers3/ |
| H A D | razers_parallel.h | 567 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; in _mapSingleReadsParallelToContig() typedef
959 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; in _mapSingleReadsParallel() typedef
|
| H A D | razers_matepairs_parallel.h | 87 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; typedef
1371 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; in _mapMatePairReadsParallel() typedef
|
| /dports/biology/seqan1/seqan-1.3.1/seqan/store/ |
| H A D | store_io_bam.h | 415 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; in _writeAlignments() typedef
|
| H A D | store_all.h | 458 typedef StringSet<TReadSeq, TReadSeqStoreSpec> TReadSeqStore; typedef
|
| H A D | store_io_sam.h | 931 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; in _writeAlignments() typedef
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/snp_store/ |
| H A D | snp_store.cpp | 607 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; // TReadSet in detectSNPs() typedef
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/bs_tools/ |
| H A D | casbar.cpp | 609 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; // TReadSet in detectSNPsForContig() typedef
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/realign/ |
| H A D | realign_base.h | 215 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; typedef
|
| /dports/biology/seqan1/seqan-1.3.1/apps/snp_store/ |
| H A D | snp_store.cpp | 1186 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; // TReadSet in detectSNPs() typedef
|
| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/realign/ |
| H A D | realign_base.h | 215 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; typedef
|
| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/realign/ |
| H A D | realign_base.h | 215 typedef typename TFragmentStore::TReadSeqStore TReadSeqStore; typedef
|