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Searched defs:_patternSeq (Results 1 – 4 of 4) sorted by relevance

/dports/biology/ugene/ugene-40.1/src/plugins/smith_waterman/src/
H A DSmithWatermanAlgorithmCUDA.cpp38 …rmanAlgorithmCUDA::estimateNeededGpuMemory(const SMatrix &sm, const QByteArray &_patternSeq, const… in estimateNeededGpuMemory()
47 …rmanAlgorithmCUDA::estimateNeededRamAmount(const SMatrix &sm, const QByteArray &_patternSeq, const… in estimateNeededRamAmount()
58 void SmithWatermanAlgorithmCUDA::launch(const SMatrix &sm, const QByteArray &_patternSeq, const QBy… in launch()
H A DSmithWatermanAlgorithmOPENCL.cpp57 …anAlgorithmOPENCL::estimateNeededGpuMemory(const SMatrix &sm, const QByteArray &_patternSeq, const… in estimateNeededGpuMemory()
82 …anAlgorithmOPENCL::estimateNeededRamAmount(const SMatrix &sm, const QByteArray &_patternSeq, const… in estimateNeededRamAmount()
145 void SmithWatermanAlgorithmOPENCL::launch(const SMatrix &sm, const QByteArray &_patternSeq, const Q… in launch()
H A DSmithWatermanAlgorithm.cpp97 const QByteArray &_patternSeq, in setValues()
113 const QByteArray &_patternSeq, in launch()
H A DSmithWatermanAlgorithmSSE2.cpp67 &_patternSeq, in estimateNeededRamAmount()
101 …rmanAlgorithmSSE2::launch(const SMatrix &_substitutionMatrix, const QByteArray &_patternSeq, const… in launch()