Searched defs:alignSeq (Results 1 – 10 of 10) sorted by relevance
| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/graph_msa/ |
| H A D | graph_align_tcoffee_progressive.h | 49 TSequence& alignSeq) in _buildLeafString()
83 TSegmentString& alignSeq, in _createAlignmentGraph()
194 TSegmentString& alignSeq, in _createMatchingGraph()
424 TSequence& alignSeq) in _recursiveProgressiveMatching()
475 TSegmentString alignSeq; in progressiveMatching() local
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| H A D | graph_align_tcoffee_distance.h | 112 TSegmentString alignSeq; in getDistanceMatrix() local
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/graph_msa/ |
| H A D | graph_align_tcoffee_progressive.h | 49 TSequence& alignSeq) in _buildLeafString()
83 TSegmentString& alignSeq, in _createAlignmentGraph()
194 TSegmentString& alignSeq, in _createMatchingGraph()
424 TSequence& alignSeq) in _recursiveProgressiveMatching()
475 TSegmentString alignSeq; in progressiveMatching() local
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| H A D | graph_align_tcoffee_distance.h | 112 TSegmentString alignSeq; in getDistanceMatrix() local
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_msa/ |
| H A D | graph_align_tcoffee_progressive.h | 49 TSequence& alignSeq) in _buildLeafString()
84 TSegmentString& alignSeq, in _createAlignmentGraph()
197 TSegmentString& alignSeq, in _createMatchingGraph()
427 TSequence& alignSeq) in _recursiveProgressiveMatching()
478 TSegmentString alignSeq; in progressiveMatching() local
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| H A D | graph_align_tcoffee_distance.h | 112 TSegmentString alignSeq; in getDistanceMatrix() local
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| /dports/biology/seqan1/seqan-1.3.1/seqan/graph_msa/ |
| H A D | graph_align_tcoffee_progressive.h | 49 TSequence& alignSeq) in _buildLeafString()
82 TSegmentString& alignSeq, in _createAlignmentGraph()
198 TSegmentString& alignSeq, in _createMatchingGraph()
428 TSequence& alignSeq) in _recursiveProgressiveMatching()
479 TSegmentString alignSeq; in progressiveMatching() local
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| H A D | graph_align_tcoffee_distance.h | 110 TSegmentString alignSeq; in getDistanceMatrix() local
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| /dports/biology/jalview/jalview/test/MCview/ |
| H A D | PDBChainTest.java | 421 AlignSeq alignSeq = AlignSeq.doGlobalNWAlignment(s1, s2, AlignSeq.PEP); in testMakeExactMapping() local
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| /dports/biology/emboss/EMBOSS-6.6.0/ajax/core/ |
| H A D | ajalign.c | 3799 static const AjPSeq alignSeq(const AjPAlign thys, ajint iseq, ajint iali) in alignSeq() function
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