| /dports/math/py-networkx/networkx-2.6.3/networkx/algorithms/bipartite/ |
| H A D | generators.py | 65 def configuration_model(aseq, bseq, create_using=None, seed=None): argument
135 def havel_hakimi_graph(aseq, bseq, create_using=None): argument
209 def reverse_havel_hakimi_graph(aseq, bseq, create_using=None): argument
282 def alternating_havel_hakimi_graph(aseq, bseq, create_using=None): argument
360 def preferential_attachment_graph(aseq, p, create_using=None, seed=None): argument
|
| /dports/biology/clustal-omega/clustal-omega-1.2.4/src/squid/ |
| H A D | alignio.c | 42 char **aseq; in AllocAlignment() local
141 SAMizeAlignment(char **aseq, int nseq, int alen) in SAMizeAlignment()
187 SAMizeAlignmentByGapFrac(char **aseq, int nseq, int alen, float maxgap) in SAMizeAlignmentByGapFrac()
234 MakeAlignedString(char *aseq, int alen, char *ss, char **ret_s) in MakeAlignedString()
272 MakeDealignedString(char *aseq, int alen, char *ss, char **ret_s) in MakeDealignedString()
302 DealignedLength(char *aseq) in DealignedLength()
632 AlignmentHomogenousGapsym(char **aseq, int nseq, int alen, char gapsym) in AlignmentHomogenousGapsym()
|
| H A D | weight.c | 43 GSCWeights(char **aseq, int nseq, int alen, float *wgt) in GSCWeights()
151 VoronoiWeights(char **aseq, int nseq, int alen, float *wgt) in VoronoiWeights()
460 PositionBasedWeights(char **aseq, int nseq, int alen, float *wgt) in PositionBasedWeights()
701 SingleLinkCluster(char **aseq, int nseq, int alen, float maxid, in SingleLinkCluster()
|
| /dports/biology/wise/wise2.4.1/src/HMMer2/ |
| H A D | alignio.c | 43 char **aseq; in AllocAlignment() local
109 char **aseq; /* aligned sequences */ in ReadAlignedFASTA() local
202 MakeAlignedString(char *aseq, int alen, char *ss, char **ret_s) in MakeAlignedString()
240 MakeDealignedString(char *aseq, int alen, char *ss, char **ret_s) in MakeDealignedString()
270 DealignedLength(char *aseq) in DealignedLength()
|
| H A D | weight.c | 39 GSCWeights(char **aseq, AINFO *ainfo) in GSCWeights()
146 VoronoiWeights(char **aseq, AINFO *ainfo) in VoronoiWeights()
456 FilterAlignment(char **aseq, int nseq, AINFO *ainfo, float cutoff, in FilterAlignment()
540 SampleAlignment(char **aseq, int nseq, AINFO *ainfo, int sample, in SampleAlignment()
|
| H A D | modelmakers.c | 89 P7Handmodelmaker(char **aseq, char **dsq, AINFO *ainfo, in P7Handmodelmaker()
151 P7Fastmodelmaker(char **aseq, char **dsq, AINFO *ainfo, in P7Fastmodelmaker()
503 matassign2hmm(char **aseq, char **dsq, AINFO *ainfo, in matassign2hmm()
582 fake_tracebacks(char **aseq, int nseq, int alen, int *matassign, in fake_tracebacks()
|
| /dports/biology/mafft/mafft-7.267-without-extensions/core/ |
| H A D | iteration.c | 57 char **align0( double *wm, char **aseq, char *seq, double effarr[M], int icyc, int ex ) in align0()
83 double score_m_1_0( char **aseq, int locnjob, int s, double **eff, double effarr[M] ) in score_m_1_0()
99 int iteration( int locnjob, char name[M][B], int nlen[M], char **aseq, char **bseq, int ***topol, d… in iteration()
|
| /dports/lang/gcc12-devel/gcc-12-20211205/gcc/testsuite/gdc.test/fail_compilation/ |
| H A D | fail22006.d | 14 alias aseq = AliasSeq!(0, 1, 2, 3); in test22006() local
|
| /dports/lang/gcc12-devel/gcc-12-20211205/gcc/testsuite/gdc.test/compilable/ |
| H A D | test22006.d | 6 alias aseq = AliasSeq!(0, 1, 2, 3); in test22006() local
|
| /dports/lang/gcc11/gcc-11.2.0/gcc/testsuite/gdc.test/compilable/ |
| H A D | test22006.d | 6 alias aseq = AliasSeq!(0, 1, 2, 3); in test22006() local
|
| /dports/lang/gcc11/gcc-11.2.0/gcc/testsuite/gdc.test/fail_compilation/ |
| H A D | fail22006.d | 14 alias aseq = AliasSeq!(0, 1, 2, 3); in test22006() local
|
| /dports/lang/gcc11-devel/gcc-11-20211009/gcc/testsuite/gdc.test/compilable/ |
| H A D | test22006.d | 6 alias aseq = AliasSeq!(0, 1, 2, 3); in test22006() local
|
| /dports/lang/gcc11-devel/gcc-11-20211009/gcc/testsuite/gdc.test/fail_compilation/ |
| H A D | fail22006.d | 14 alias aseq = AliasSeq!(0, 1, 2, 3); in test22006() local
|
| /dports/misc/cxx_atomics_pic/gcc-11.2.0/gcc/testsuite/gdc.test/fail_compilation/ |
| H A D | fail22006.d | 14 alias aseq = AliasSeq!(0, 1, 2, 3); in test22006() local
|
| /dports/misc/cxx_atomics_pic/gcc-11.2.0/gcc/testsuite/gdc.test/compilable/ |
| H A D | test22006.d | 6 alias aseq = AliasSeq!(0, 1, 2, 3); in test22006() local
|
| /dports/lang/gcc10-devel/gcc-10-20211008/gcc/testsuite/gdc.test/compilable/ |
| H A D | test22006.d | 6 alias aseq = AliasSeq!(0, 1, 2, 3); in test22006() local
|
| /dports/lang/gcc10-devel/gcc-10-20211008/gcc/testsuite/gdc.test/fail_compilation/ |
| H A D | fail22006.d | 14 alias aseq = AliasSeq!(0, 1, 2, 3); in test22006() local
|
| /dports/math/gp2c/gp2c-0.0.12/src/ |
| H A D | genblock.c | 184 void makeblock(int bl, int n, int aseq, int ret, int savx) in makeblock()
194 void makeblocks(int bl1, int bl2, int n, int bseq, int aseq, int ret, int savx) in makeblocks()
205 void makeblocks3(int bl1, int bl2, int bl3, int n, int bseq, int aseq, int ret, int sav0, int savx) in makeblocks3()
508 int aseq,bseq=-1; in genblockmatrixl() local
540 int aseq,bseq=-1; in genblockaffmatrixl() local
577 int aseq; in genblockvector() local
591 int aseq; in genblockindex() local
606 int aseq; in genblockmatrix() local
644 int aseq, ret, i, savx; in genblockvecaff() local
|
| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/hmm2/src/hmmer2/ |
| H A D | aligneval.cpp | 440 AlignmentIdentityBySampling(char **aseq, int L, int N, int nsample) in AlignmentIdentityBySampling()
472 MajorityRuleConsensus(char **aseq, int nseq, int alen) in MajorityRuleConsensus()
519 DealignedLength(char *aseq) in DealignedLength()
544 MakeAlignedString(char *aseq, int alen, char *ss, char **ret_s) in MakeAlignedString()
|
| H A D | weight.cpp | 45 GSCWeights(char **aseq, int nseq, int alen, float *wgt) in GSCWeights()
153 VoronoiWeights(char **aseq, int nseq, int alen, float *wgt) in VoronoiWeights()
462 PositionBasedWeights(char **aseq, int nseq, int alen, float *wgt) in PositionBasedWeights()
699 SingleLinkCluster(char **aseq, int nseq, int alen, float maxid, in SingleLinkCluster()
|
| /dports/audio/gsequencer/gsequencer-3.10.4/ags/test/plugin/ |
| H A D | ags_lv2_plugin_test.c | 324 LV2_Atom_Sequence *aseq; in ags_lv2_plugin_test_atom_sequence_append_midi() local
381 LV2_Atom_Sequence *aseq; in ags_lv2_plugin_test_atom_sequence_remove_midi() local
460 LV2_Atom_Sequence *aseq; in ags_lv2_plugin_test_clear_atom_sequence() local
|
| /dports/biology/wise/wise2.4.1/src/dnaindex/ |
| H A D | test_kmer.c | 15 AssemblySequence * aseq; in main() local
|
| /dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/src/ |
| H A D | modelmaking.c | 138 Transmogrify(struct trace_s *mtr, char *aseq, struct trace_s **ret_tr, struct trmem_s **ret_pool) in Transmogrify()
303 EasyModelmaker(char **aseq, AINFO *ainfo, int nseq, struct prior_s *prior, in EasyModelmaker()
|
| /dports/audio/jalv/jalv-1.6.6/src/ |
| H A D | lv2_evbuf.c | 140 LV2_Atom_Sequence* aseq = &iter.evbuf->buf; in lv2_evbuf_get() local
163 LV2_Atom_Sequence* aseq = &iter->evbuf->buf; in lv2_evbuf_write() local
|
| /dports/audio/zrythm/zrythm-1.0.0-alpha.26.0.13/src/plugins/lv2/ |
| H A D | lv2_evbuf.c | 168 LV2_Atom_Sequence* aseq; in lv2_evbuf_get() local
192 LV2_Atom_Sequence* aseq; in lv2_evbuf_write() local
|