Searched defs:bbases (Results 1 – 1 of 1) sorted by relevance
29 const jbyte *abases=a_bases, *bbases=b_bases; in mateByOverlap() local119 const jbyte *abases=a_bases, *bbases=b_bases; in findBestRatio() local170 const jbyte *abases=a_bases, *bbases=b_bases; in findBestRatio_WithQualities() local224 const jbyte *abases=a_bases, *bbases=b_bases, *aqual=a_quality, *bqual=b_quality; in mateByOverlapRatio_WithQualities() local314 const jbyte *abases=a_bases, *bbases=b_bases; in mateByOverlapRatio() local