| /dports/biology/seqan1/seqan-1.3.1/lib/samtools/ |
| H A D | bam2bcf.c | 19 bcf_callaux_t *bca; in bcf_call_init() local
29 void bcf_call_destroy(bcf_callaux_t *bca) in bcf_call_destroy()
37 int bcf_call_glfgen(int _n, const bam_pileup1_t *pl, int ref_base, bcf_callaux_t *bca, bcf_callret1… in bcf_call_glfgen()
173 const bcf_callaux_t *bca, const char *ref) in bcf_call2bcf()
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| /dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/ |
| H A D | bam2bcf.c | 20 bcf_callaux_t *bca; in bcf_call_init() local
32 void bcf_call_destroy(bcf_callaux_t *bca) in bcf_call_destroy()
40 int bcf_call_glfgen(int _n, const bam_pileup1_t *pl, int ref_base, bcf_callaux_t *bca, bcf_callret1… in bcf_call_glfgen()
270 const bcf_callaux_t *bca, const char *ref) in bcf_call2bcf()
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| /dports/biology/py-pysam/pysam-0.18.0/samtools/ |
| H A D | bam2bcf.c | 47 bcf_callaux_t *bca; in bcf_call_init() local
70 void bcf_call_destroy(bcf_callaux_t *bca) in bcf_call_destroy()
118 void bcf_callaux_clean(bcf_callaux_t *bca, bcf_call_t *call) in bcf_callaux_clean()
147 int bcf_call_glfgen(int _n, const bam_pileup1_t *pl, int ref_base, bcf_callaux_t *bca, bcf_callret1… in bcf_call_glfgen()
506 int bcf_call_combine(int n, const bcf_callret1_t *calls, bcf_callaux_t *bca, int ref_base /*4-bit*/… in bcf_call_combine()
677 …bcf_call_t *bc, bcf1_t *rec, bcf_callret1_t *bcr, int fmt_flag, const bcf_callaux_t *bca, const ch… in bcf_call2bcf()
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| H A D | bam2bcf.c.pysam.c | 49 bcf_callaux_t *bca; in bcf_call_init() local
72 void bcf_call_destroy(bcf_callaux_t *bca) in bcf_call_destroy()
120 void bcf_callaux_clean(bcf_callaux_t *bca, bcf_call_t *call) in bcf_callaux_clean()
149 int bcf_call_glfgen(int _n, const bam_pileup1_t *pl, int ref_base, bcf_callaux_t *bca, bcf_callret1… in bcf_call_glfgen()
508 int bcf_call_combine(int n, const bcf_callret1_t *calls, bcf_callaux_t *bca, int ref_base /*4-bit*/… in bcf_call_combine()
679 …bcf_call_t *bc, bcf1_t *rec, bcf_callret1_t *bcr, int fmt_flag, const bcf_callaux_t *bca, const ch… in bcf_call2bcf()
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| /dports/biology/samtools/samtools-1.14/ |
| H A D | bam2bcf.c | 47 bcf_callaux_t *bca; in bcf_call_init() local
70 void bcf_call_destroy(bcf_callaux_t *bca) in bcf_call_destroy()
118 void bcf_callaux_clean(bcf_callaux_t *bca, bcf_call_t *call) in bcf_callaux_clean()
147 int bcf_call_glfgen(int _n, const bam_pileup1_t *pl, int ref_base, bcf_callaux_t *bca, bcf_callret1… in bcf_call_glfgen()
506 int bcf_call_combine(int n, const bcf_callret1_t *calls, bcf_callaux_t *bca, int ref_base /*4-bit*/… in bcf_call_combine()
677 …bcf_call_t *bc, bcf1_t *rec, bcf_callret1_t *bcr, int fmt_flag, const bcf_callaux_t *bca, const ch… in bcf_call2bcf()
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| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | bam2bcf_indel.c | 79 static inline int est_seqQ(const bcf_callaux_t *bca, int l, int l_run) in est_seqQ()
101 static inline void get_pos(const bcf_callaux_t *bca, bam_pileup1_t *p, in get_pos()
162 int pos, bcf_callaux_t *bca, const char *ref, in bcf_cgp_find_types()
279 int pos, bcf_callaux_t *bca, const char *ref, in bcf_cgp_ref_sample()
493 static int bcf_cgp_align_score(bam_pileup1_t *p, bcf_callaux_t *bca, in bcf_cgp_align_score()
594 bcf_callaux_t *bca, char *inscns, in bcf_cgp_compute_indelQ()
695 bcf_callaux_t *bca, const char *ref) in bcf_call_gap_prep()
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| H A D | bam2bcf.c | 46 bcf_callaux_t *bca; in bcf_call_init() local
75 void bcf_call_destroy(bcf_callaux_t *bca) in bcf_call_destroy()
144 void bcf_callaux_clean(bcf_callaux_t *bca, bcf_call_t *call) in bcf_callaux_clean()
183 int bcf_call_glfgen(int _n, const bam_pileup1_t *pl, int ref_base, bcf_callaux_t *bca, bcf_callret1… in bcf_call_glfgen()
746 int bcf_call_combine(int n, const bcf_callret1_t *calls, bcf_callaux_t *bca, int ref_base /*4-bit*/… in bcf_call_combine()
976 …bcf_call_t *bc, bcf1_t *rec, bcf_callret1_t *bcr, int fmt_flag, const bcf_callaux_t *bca, const ch… in bcf_call2bcf()
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| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | bam2bcf_indel.c | 79 static inline int est_seqQ(const bcf_callaux_t *bca, int l, int l_run) in est_seqQ()
101 static inline void get_pos(const bcf_callaux_t *bca, bam_pileup1_t *p, in get_pos()
162 int pos, bcf_callaux_t *bca, const char *ref, in bcf_cgp_find_types()
279 int pos, bcf_callaux_t *bca, const char *ref, in bcf_cgp_ref_sample()
493 static int bcf_cgp_align_score(bam_pileup1_t *p, bcf_callaux_t *bca, in bcf_cgp_align_score()
594 bcf_callaux_t *bca, char *inscns, in bcf_cgp_compute_indelQ()
695 bcf_callaux_t *bca, const char *ref) in bcf_call_gap_prep()
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| H A D | bam2bcf.c | 46 bcf_callaux_t *bca; in bcf_call_init() local
75 void bcf_call_destroy(bcf_callaux_t *bca) in bcf_call_destroy()
144 void bcf_callaux_clean(bcf_callaux_t *bca, bcf_call_t *call) in bcf_callaux_clean()
183 int bcf_call_glfgen(int _n, const bam_pileup1_t *pl, int ref_base, bcf_callaux_t *bca, bcf_callret1… in bcf_call_glfgen()
746 int bcf_call_combine(int n, const bcf_callret1_t *calls, bcf_callaux_t *bca, int ref_base /*4-bit*/… in bcf_call_combine()
976 …bcf_call_t *bc, bcf1_t *rec, bcf_callret1_t *bcr, int fmt_flag, const bcf_callaux_t *bca, const ch… in bcf_call2bcf()
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| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | bam2bcf_indel.c | 79 static inline int est_seqQ(const bcf_callaux_t *bca, int l, int l_run) in est_seqQ()
101 static inline void get_pos(const bcf_callaux_t *bca, bam_pileup1_t *p, in get_pos()
162 int pos, bcf_callaux_t *bca, const char *ref, in bcf_cgp_find_types()
279 int pos, bcf_callaux_t *bca, const char *ref, in bcf_cgp_ref_sample()
493 static int bcf_cgp_align_score(bam_pileup1_t *p, bcf_callaux_t *bca, in bcf_cgp_align_score()
594 bcf_callaux_t *bca, char *inscns, in bcf_cgp_compute_indelQ()
695 bcf_callaux_t *bca, const char *ref) in bcf_call_gap_prep()
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| H A D | bam2bcf_indel.c.pysam.c | 81 static inline int est_seqQ(const bcf_callaux_t *bca, int l, int l_run) in est_seqQ()
103 static inline void get_pos(const bcf_callaux_t *bca, bam_pileup1_t *p, in get_pos()
164 int pos, bcf_callaux_t *bca, const char *ref, in bcf_cgp_find_types()
281 int pos, bcf_callaux_t *bca, const char *ref, in bcf_cgp_ref_sample()
495 static int bcf_cgp_align_score(bam_pileup1_t *p, bcf_callaux_t *bca, in bcf_cgp_align_score()
596 bcf_callaux_t *bca, char *inscns, in bcf_cgp_compute_indelQ()
697 bcf_callaux_t *bca, const char *ref) in bcf_call_gap_prep()
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| H A D | bam2bcf.c | 46 bcf_callaux_t *bca; in bcf_call_init() local
75 void bcf_call_destroy(bcf_callaux_t *bca) in bcf_call_destroy()
144 void bcf_callaux_clean(bcf_callaux_t *bca, bcf_call_t *call) in bcf_callaux_clean()
183 int bcf_call_glfgen(int _n, const bam_pileup1_t *pl, int ref_base, bcf_callaux_t *bca, bcf_callret1… in bcf_call_glfgen()
746 int bcf_call_combine(int n, const bcf_callret1_t *calls, bcf_callaux_t *bca, int ref_base /*4-bit*/… in bcf_call_combine()
976 …bcf_call_t *bc, bcf1_t *rec, bcf_callret1_t *bcr, int fmt_flag, const bcf_callaux_t *bca, const ch… in bcf_call2bcf()
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| H A D | bam2bcf.c.pysam.c | 48 bcf_callaux_t *bca; in bcf_call_init() local
77 void bcf_call_destroy(bcf_callaux_t *bca) in bcf_call_destroy()
146 void bcf_callaux_clean(bcf_callaux_t *bca, bcf_call_t *call) in bcf_callaux_clean()
185 int bcf_call_glfgen(int _n, const bam_pileup1_t *pl, int ref_base, bcf_callaux_t *bca, bcf_callret1… in bcf_call_glfgen()
748 int bcf_call_combine(int n, const bcf_callret1_t *calls, bcf_callaux_t *bca, int ref_base /*4-bit*/… in bcf_call_combine()
978 …bcf_call_t *bc, bcf1_t *rec, bcf_callret1_t *bcr, int fmt_flag, const bcf_callaux_t *bca, const ch… in bcf_call2bcf()
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| /dports/devel/grpc130/grpc-1.30.2/test/core/bad_client/tests/ |
| H A D | window_overflow.cc | 95 grpc_bad_client_arg bca[2]; in main() local
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| H A D | head_of_line_blocking.cc | 134 grpc_bad_client_arg bca = {nullptr, nullptr, g_buffer, g_count}; in main() local
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| /dports/devel/grpc134/grpc-1.34.1/test/core/bad_client/tests/ |
| H A D | window_overflow.cc | 95 grpc_bad_client_arg bca[2]; in main() local
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| H A D | head_of_line_blocking.cc | 134 grpc_bad_client_arg bca = {nullptr, nullptr, g_buffer, g_count}; in main() local
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| /dports/devel/grpc/grpc-1.42.0/test/core/bad_client/tests/ |
| H A D | window_overflow.cc | 94 grpc_bad_client_arg bca[2]; in main() local
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| H A D | head_of_line_blocking.cc | 133 grpc_bad_client_arg bca = {nullptr, nullptr, g_buffer, g_count}; in main() local
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| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/grpc/src/test/core/bad_client/tests/ |
| H A D | window_overflow.cc | 95 grpc_bad_client_arg bca[2]; in main() local
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| H A D | head_of_line_blocking.cc | 134 grpc_bad_client_arg bca = {nullptr, nullptr, g_buffer, g_count}; in main() local
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| /dports/devel/R-cran-broom/broom/R/ |
| H A D | boot-tidiers.R | 57 conf.method = c("perc", "bca", "basic", "norm"),
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| /dports/mail/cone/cone-1.1/cone/ |
| H A D | configscreen.C | 502 Curses::CursesAttr bca; in init() local
831 Curses::CursesAttr bca; in addAddress() local
874 Curses::CursesAttr bca; in addListAddress() local
984 Curses::CursesAttr bca; in addHeader() local
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| /dports/lang/gcc12-devel/gcc-12-20211205/gcc/testsuite/gcc.target/powerpc/ |
| H A D | builtins-1.fold.h | 148 vector bool char bca = {0, 1, 4, 7}; in main() local
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| /dports/devel/riscv64-none-elf-gcc/gcc-8.4.0/gcc/testsuite/gcc.target/powerpc/ |
| H A D | builtins-1.fold.h | 148 vector bool char bca = {0, 1, 4, 7}; in main() local
|