| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/unit_test/ |
| H A D | unit_test_cds_fix.cpp | 167 void CheckTerminalExceptionResults (CSeq_feat& cds, CScope& scope, in CheckTerminalExceptionResults()
198 CRef<CSeq_feat> cds = unit_test_util::GetCDSFromGoodNucProtSet (entry); in OneTerminalTranslationExceptionTest() local
274 CRef<CSeq_feat> cds = unit_test_util::GetCDSFromGoodNucProtSet (entry); in BOOST_AUTO_TEST_CASE() local
328 CRef<CSeq_feat> cds = unit_test_util::GetCDSFromGoodNucProtSet (entry); in BOOST_AUTO_TEST_CASE() local
453 CRef<CSeq_feat> cds = unit_test_util::GetCDSFromGoodNucProtSet (entry); in BOOST_AUTO_TEST_CASE() local
541 CRef<CSeq_feat> cds = unit_test_util::AddMiscFeature(entry, 15); in BOOST_AUTO_TEST_CASE() local
576 CRef<CSeq_feat> cds(new CSeq_feat()); in BOOST_AUTO_TEST_CASE() local
590 const CSeq_feat& cds = it->GetOriginalFeature(); in BOOST_AUTO_TEST_CASE() local
616 const CSeq_feat& cds = it2->GetOriginalFeature(); in BOOST_AUTO_TEST_CASE() local
639 const CSeq_feat& cds = it3->GetOriginalFeature(); in BOOST_AUTO_TEST_CASE() local
[all …]
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| H A D | unit_test_loc_edit.cpp | 228 CRef<CSeq_feat> cds = unit_test_util::GetCDSFromGoodNucProtSet (entry); in BOOST_AUTO_TEST_CASE() local
507 CRef<CSeq_feat> cds = unit_test_util::GetCDSFromGoodNucProtSet (entry); in BOOST_AUTO_TEST_CASE() local
1605 CRef<CSeq_feat> cds = unit_test_util::AddMiscFeature(entry); in MakeMultiSeqCDS() local
1630 CRef<CSeq_feat> cds = entry->SetSet().SetAnnot().front()->SetData().SetFtable().front(); in TruncateTransSplicedCDSForExtension() local
1660 CRef<CSeq_feat> cds = entry->SetSet().SetAnnot().front()->SetData().SetFtable().front(); in Check5Policy() local
1722 CRef<CSeq_feat> cds = entry->SetSet().SetAnnot().front()->SetData().SetFtable().front(); in Check5Extend() local
1743 CRef<CSeq_feat> cds = entry->SetSet().SetAnnot().front()->SetData().SetFtable().front(); in Check3Extend() local
1792 CRef<CSeq_feat> cds = unit_test_util::AddMiscFeature(entry); in Check3Policy() local
1918 CRef<CSeq_feat> cds = unit_test_util::AddMiscFeature(entry); in CheckAdjustStart() local
1950 CRef<CSeq_feat> cds = unit_test_util::AddMiscFeature(entry); in CheckAdjustStop() local
[all …]
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| /dports/games/gnubik/gnubik-2.4.3/src/ |
| H A D | colour-dialog.c | 87 struct colour_dialog_state *cds = data; in set_swatch_colour() local
109 struct colour_dialog_state *cds = data; in select_swatch() local
129 update_radio_buttons (struct colour_dialog_state *cds) in update_radio_buttons()
181 struct colour_dialog_state *cds = data; in choose_image() local
251 struct colour_dialog_state *cds = data; in set_tiled() local
263 struct colour_dialog_state *cds = data; in set_mosaic() local
276 struct colour_dialog_state *cds = data; in set_plain() local
293 struct colour_dialog_state *cds = g_malloc (sizeof *cds); in colour_select_menu() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/cd_utils/ |
| H A D | cuCdFamily.cpp | 134 void CDFamily::getChildren(vector<CCdCore*>& cds, CCdCore* parentCD) const in getChildren()
144 void CDFamily::getChildren(vector<CCdCore*>& cds, CDFamilyIterator pit) const in getChildren()
169 void CDFamily::getDescendants(vector<CCdCore*>& cds, CCdCore* parentCd) const { in getDescendants()
178 void CDFamily::getDescendants(set<CCdCore*>& cds, CCdCore* parentCd) const { in getDescendants()
189 vector<CCdCore*> cds; in subfamily() local
212 void CDFamily::selectCDs(const vector< CCdCore* > & cds) in selectCDs()
231 int CDFamily::getSelectedCDs(vector<CCdCore*>& cds) in getSelectedCDs()
339 CDFamilyIterator CDFamily::convergeTo(const set<CCdCore*>& cds, bool byAccession)const in convergeTo() argument
464 int CDFamily::createFamilies(vector<CCdCore*>& cds, vector<CDFamily*>& families) in createFamilies()
513 bool CDFamily::findParent(CCdCore* cd, vector<CCdCore*>& cds) in findParent()
[all …]
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| /dports/math/vtk8/VTK-8.2.0/IO/XML/Testing/Cxx/ |
| H A D | TestXMLCompositeDataReaderDistribution.cxx | 45 std::multiset<vtkIdType> PointCounts(vtkCompositeDataSet *cds) in PointCounts()
63 bool VerifyCounts(vtkCompositeDataSet *cds, in VerifyCounts()
69 std::string DumpCounts(vtkCompositeDataSet *cds) in DumpCounts()
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| /dports/math/vtk9/VTK-9.1.0/IO/XML/Testing/Cxx/ |
| H A D | TestXMLCompositeDataReaderDistribution.cxx | 46 std::multiset<vtkIdType> PointCounts(vtkCompositeDataSet* cds) in PointCounts()
64 bool VerifyCounts(vtkCompositeDataSet* cds, const std::multiset<vtkIdType>& expected) in VerifyCounts()
69 std::string DumpCounts(vtkCompositeDataSet* cds) in DumpCounts()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/ |
| H A D | cds_fix.cpp | 110 TSeqPos GetLastPartialCodonLength(const objects::CSeq_feat& cds, objects::CScope& scope) in GetLastPartialCodonLength()
138 CRef<CSeq_loc> GetLastCodonLoc(const CSeq_feat& cds, CScope& scope) in GetLastCodonLoc()
162 bool AddTerminalCodeBreak(CSeq_feat& cds, CScope& scope) in AddTerminalCodeBreak()
366 bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) in AdjustProteinMolInfoToMatchCDS()
424 bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) in AdjustForCDSPartials()
482 string s_GetProductName (const CSeq_feat& cds, CScope& scope) in s_GetProductName()
525 CRef<CSeq_feat> MakemRNAforCDS(const CSeq_feat& cds, CScope& scope) in MakemRNAforCDS()
670 CConstRef<CSeq_feat> GetmRNAforCDS(const CSeq_feat& cds, CScope& scope) in GetmRNAforCDS()
786 bool TruncateCDSAtStop(CSeq_feat& cds, CScope& scope) in TruncateCDSAtStop()
835 bool ExtendCDSToStopCodon (CSeq_feat& cds, CScope& scope) in ExtendCDSToStopCodon()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/ |
| H A D | cds_fix.cpp | 110 TSeqPos GetLastPartialCodonLength(const objects::CSeq_feat& cds, objects::CScope& scope) in GetLastPartialCodonLength()
138 CRef<CSeq_loc> GetLastCodonLoc(const CSeq_feat& cds, CScope& scope) in GetLastCodonLoc()
162 bool AddTerminalCodeBreak(CSeq_feat& cds, CScope& scope) in AddTerminalCodeBreak()
366 bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) in AdjustProteinMolInfoToMatchCDS()
424 bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) in AdjustForCDSPartials()
482 string s_GetProductName (const CSeq_feat& cds, CScope& scope) in s_GetProductName()
525 CRef<CSeq_feat> MakemRNAforCDS(const CSeq_feat& cds, CScope& scope) in MakemRNAforCDS()
670 CConstRef<CSeq_feat> GetmRNAforCDS(const CSeq_feat& cds, CScope& scope) in GetmRNAforCDS()
786 bool TruncateCDSAtStop(CSeq_feat& cds, CScope& scope) in TruncateCDSAtStop()
835 bool ExtendCDSToStopCodon (CSeq_feat& cds, CScope& scope) in ExtendCDSToStopCodon()
[all …]
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| /dports/emulators/qemu60/qemu-6.0.0/include/hw/s390x/ |
| H A D | css.h | 136 CcwDataStream cds; member
290 static inline void ccw_dstream_rewind(CcwDataStream *cds) in ccw_dstream_rewind()
297 static inline bool ccw_dstream_good(CcwDataStream *cds) in ccw_dstream_good()
302 static inline uint16_t ccw_dstream_residual_count(CcwDataStream *cds) in ccw_dstream_residual_count()
307 static inline uint16_t ccw_dstream_avail(CcwDataStream *cds) in ccw_dstream_avail()
312 static inline int ccw_dstream_advance(CcwDataStream *cds, int len) in ccw_dstream_advance()
317 static inline int ccw_dstream_write_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_write_buf()
322 static inline int ccw_dstream_read_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_read_buf()
327 #define ccw_dstream_read(cds, v) ccw_dstream_read_buf((cds), &(v), sizeof(v)) argument
328 #define ccw_dstream_write(cds, v) ccw_dstream_write_buf((cds), &(v), sizeof(v)) argument
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| /dports/emulators/qemu-powernv/qemu-powernv-3.0.50/include/hw/s390x/ |
| H A D | css.h | 135 CcwDataStream cds; member
290 static inline void ccw_dstream_rewind(CcwDataStream *cds) in ccw_dstream_rewind()
297 static inline bool ccw_dstream_good(CcwDataStream *cds) in ccw_dstream_good()
302 static inline uint16_t ccw_dstream_residual_count(CcwDataStream *cds) in ccw_dstream_residual_count()
307 static inline uint16_t ccw_dstream_avail(CcwDataStream *cds) in ccw_dstream_avail()
312 static inline int ccw_dstream_advance(CcwDataStream *cds, int len) in ccw_dstream_advance()
317 static inline int ccw_dstream_write_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_write_buf()
322 static inline int ccw_dstream_read_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_read_buf()
327 #define ccw_dstream_read(cds, v) ccw_dstream_read_buf((cds), &(v), sizeof(v)) argument
328 #define ccw_dstream_write(cds, v) ccw_dstream_write_buf((cds), &(v), sizeof(v)) argument
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| /dports/security/kleopatra/kleopatra-21.12.3/src/utils/ |
| H A D | kuniqueservice_win.cpp | 69 void handleRequest(const COPYDATASTRUCT *cds) in handleRequest()
139 COPYDATASTRUCT cds; in KUniqueServicePrivate() local
164 const COPYDATASTRUCT *cds = (COPYDATASTRUCT*)lParam; in windowProc() local
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| /dports/emulators/qemu42/qemu-4.2.1/include/hw/s390x/ |
| H A D | css.h | 137 CcwDataStream cds; member
295 static inline void ccw_dstream_rewind(CcwDataStream *cds) in ccw_dstream_rewind()
302 static inline bool ccw_dstream_good(CcwDataStream *cds) in ccw_dstream_good()
307 static inline uint16_t ccw_dstream_residual_count(CcwDataStream *cds) in ccw_dstream_residual_count()
312 static inline uint16_t ccw_dstream_avail(CcwDataStream *cds) in ccw_dstream_avail()
317 static inline int ccw_dstream_advance(CcwDataStream *cds, int len) in ccw_dstream_advance()
322 static inline int ccw_dstream_write_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_write_buf()
327 static inline int ccw_dstream_read_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_read_buf()
332 #define ccw_dstream_read(cds, v) ccw_dstream_read_buf((cds), &(v), sizeof(v)) argument
333 #define ccw_dstream_write(cds, v) ccw_dstream_write_buf((cds), &(v), sizeof(v)) argument
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| /dports/emulators/qemu/qemu-6.2.0/include/hw/s390x/ |
| H A D | css.h | 136 CcwDataStream cds; member
296 static inline void ccw_dstream_rewind(CcwDataStream *cds) in ccw_dstream_rewind()
303 static inline bool ccw_dstream_good(CcwDataStream *cds) in ccw_dstream_good()
308 static inline uint16_t ccw_dstream_residual_count(CcwDataStream *cds) in ccw_dstream_residual_count()
313 static inline uint16_t ccw_dstream_avail(CcwDataStream *cds) in ccw_dstream_avail()
318 static inline int ccw_dstream_advance(CcwDataStream *cds, int len) in ccw_dstream_advance()
323 static inline int ccw_dstream_write_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_write_buf()
328 static inline int ccw_dstream_read_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_read_buf()
333 #define ccw_dstream_read(cds, v) ccw_dstream_read_buf((cds), &(v), sizeof(v)) argument
334 #define ccw_dstream_write(cds, v) ccw_dstream_write_buf((cds), &(v), sizeof(v)) argument
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| /dports/emulators/qemu5/qemu-5.2.0/include/hw/s390x/ |
| H A D | css.h | 137 CcwDataStream cds; member
297 static inline void ccw_dstream_rewind(CcwDataStream *cds) in ccw_dstream_rewind()
304 static inline bool ccw_dstream_good(CcwDataStream *cds) in ccw_dstream_good()
309 static inline uint16_t ccw_dstream_residual_count(CcwDataStream *cds) in ccw_dstream_residual_count()
314 static inline uint16_t ccw_dstream_avail(CcwDataStream *cds) in ccw_dstream_avail()
319 static inline int ccw_dstream_advance(CcwDataStream *cds, int len) in ccw_dstream_advance()
324 static inline int ccw_dstream_write_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_write_buf()
329 static inline int ccw_dstream_read_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_read_buf()
334 #define ccw_dstream_read(cds, v) ccw_dstream_read_buf((cds), &(v), sizeof(v)) argument
335 #define ccw_dstream_write(cds, v) ccw_dstream_write_buf((cds), &(v), sizeof(v)) argument
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| /dports/emulators/qemu-utils/qemu-4.2.1/include/hw/s390x/ |
| H A D | css.h | 137 CcwDataStream cds; member
295 static inline void ccw_dstream_rewind(CcwDataStream *cds) in ccw_dstream_rewind()
302 static inline bool ccw_dstream_good(CcwDataStream *cds) in ccw_dstream_good()
307 static inline uint16_t ccw_dstream_residual_count(CcwDataStream *cds) in ccw_dstream_residual_count()
312 static inline uint16_t ccw_dstream_avail(CcwDataStream *cds) in ccw_dstream_avail()
317 static inline int ccw_dstream_advance(CcwDataStream *cds, int len) in ccw_dstream_advance()
322 static inline int ccw_dstream_write_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_write_buf()
327 static inline int ccw_dstream_read_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_read_buf()
332 #define ccw_dstream_read(cds, v) ccw_dstream_read_buf((cds), &(v), sizeof(v)) argument
333 #define ccw_dstream_write(cds, v) ccw_dstream_write_buf((cds), &(v), sizeof(v)) argument
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| /dports/emulators/qemu-guest-agent/qemu-5.0.1/include/hw/s390x/ |
| H A D | css.h | 137 CcwDataStream cds; member
295 static inline void ccw_dstream_rewind(CcwDataStream *cds) in ccw_dstream_rewind()
302 static inline bool ccw_dstream_good(CcwDataStream *cds) in ccw_dstream_good()
307 static inline uint16_t ccw_dstream_residual_count(CcwDataStream *cds) in ccw_dstream_residual_count()
312 static inline uint16_t ccw_dstream_avail(CcwDataStream *cds) in ccw_dstream_avail()
317 static inline int ccw_dstream_advance(CcwDataStream *cds, int len) in ccw_dstream_advance()
322 static inline int ccw_dstream_write_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_write_buf()
327 static inline int ccw_dstream_read_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_read_buf()
332 #define ccw_dstream_read(cds, v) ccw_dstream_read_buf((cds), &(v), sizeof(v)) argument
333 #define ccw_dstream_write(cds, v) ccw_dstream_write_buf((cds), &(v), sizeof(v)) argument
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| /dports/emulators/qemu-devel/qemu-de8ed1055c2ce18c95f597eb10df360dcb534f99/include/hw/s390x/ |
| H A D | css.h | 136 CcwDataStream cds; member
296 static inline void ccw_dstream_rewind(CcwDataStream *cds) in ccw_dstream_rewind()
303 static inline bool ccw_dstream_good(CcwDataStream *cds) in ccw_dstream_good()
308 static inline uint16_t ccw_dstream_residual_count(CcwDataStream *cds) in ccw_dstream_residual_count()
313 static inline uint16_t ccw_dstream_avail(CcwDataStream *cds) in ccw_dstream_avail()
318 static inline int ccw_dstream_advance(CcwDataStream *cds, int len) in ccw_dstream_advance()
323 static inline int ccw_dstream_write_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_write_buf()
328 static inline int ccw_dstream_read_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_read_buf()
333 #define ccw_dstream_read(cds, v) ccw_dstream_read_buf((cds), &(v), sizeof(v)) argument
334 #define ccw_dstream_write(cds, v) ccw_dstream_write_buf((cds), &(v), sizeof(v)) argument
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| /dports/emulators/qemu-cheri/qemu-0a323821042c36e21ea80e58b9545dfc3b0cb8ef/include/hw/s390x/ |
| H A D | css.h | 137 CcwDataStream cds; member
295 static inline void ccw_dstream_rewind(CcwDataStream *cds) in ccw_dstream_rewind()
302 static inline bool ccw_dstream_good(CcwDataStream *cds) in ccw_dstream_good()
307 static inline uint16_t ccw_dstream_residual_count(CcwDataStream *cds) in ccw_dstream_residual_count()
312 static inline uint16_t ccw_dstream_avail(CcwDataStream *cds) in ccw_dstream_avail()
317 static inline int ccw_dstream_advance(CcwDataStream *cds, int len) in ccw_dstream_advance()
322 static inline int ccw_dstream_write_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_write_buf()
327 static inline int ccw_dstream_read_buf(CcwDataStream *cds, void *buff, int len) in ccw_dstream_read_buf()
332 #define ccw_dstream_read(cds, v) ccw_dstream_read_buf((cds), &(v), sizeof(v)) argument
333 #define ccw_dstream_write(cds, v) ccw_dstream_write_buf((cds), &(v), sizeof(v)) argument
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| /dports/math/vtk9/VTK-9.1.0/Common/DataModel/Testing/Cxx/ |
| H A D | TestCompositeDataSetRange.cxx | 59 bool TestConfig(vtkCompositeDataSet* cds, vtk::CompositeDataSetOptions opts) in TestConfig()
200 bool TestOptions(vtkCompositeDataSet* cds) in TestOptions()
300 auto cds = CreateDataSet(); in TestCompositeDataSetRange() local
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| H A D | TestDataObjectTreeRange.cxx | 62 bool TestConfig(vtkDataObjectTree* cds, vtk::DataObjectTreeOptions opts) in TestConfig()
206 bool TestOptions(vtkDataObjectTree* cds) in TestOptions()
314 auto cds = CreateDataSet(); in TestDataObjectTreeRange() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/validator/ |
| H A D | feature_match.hpp | 89 void SetCDS(const CSeq_feat& cds) in SetCDS()
95 void AddCDS(CMatchCDS& cds) { m_UnderlyingCDSs.push_back(Ref(&cds)); } in AddCDS()
112 CMatchCDS(const CMappedFeat &cds) : in CMatchCDS()
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| /dports/multimedia/py-guessit/guessit-3.3.1/guessit/rules/properties/ |
| H A D | cds.py | 14 def cds(config): # pylint:disable=unused-argument function
|
| /dports/net-p2p/bazarr/bazarr-1.0.2/libs/guessit/rules/properties/ |
| H A D | cds.py | 14 def cds(config): # pylint:disable=unused-argument function
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/ |
| H A D | GencodeGtfExonFeature.java | 37 private GencodeGtfCDSFeature cds = null; field in GencodeGtfExonFeature
57 public void setCds(final GencodeGtfCDSFeature cds) { in setCds()
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| /dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SeqFeature/Gene/ |
| H A D | ExonI.pm | 118 sub cds { subroutine
|