| /dports/math/apache-commons-math/commons-math3-3.6.1-src/src/test/java/org/apache/commons/math3/genetics/ |
| H A D | ListPopulationTest.java | 49 ArrayList<Chromosome> chromosomes = new ArrayList<Chromosome> (); in testGetFittestChromosome() local
66 final ArrayList<Chromosome> chromosomes = new ArrayList<Chromosome> (); in testChromosomes() local
111 final ArrayList<Chromosome> chromosomes = new ArrayList<Chromosome> (); in testChromosomeListConstructorPopulationLimitNotPositive() local
113 new ListPopulation(chromosomes, -10) { in testChromosomeListConstructorPopulationLimitNotPositive() argument
123 final ArrayList<Chromosome> chromosomes = new ArrayList<Chromosome> (); in testConstructorListOfChromosomesBiggerThanPopulationSize() local
127 new ListPopulation(chromosomes, 1) { in testConstructorListOfChromosomesBiggerThanPopulationSize() argument
137 final ArrayList<Chromosome> chromosomes = new ArrayList<Chromosome> (); in testAddTooManyChromosomes() local
169 final ArrayList<Chromosome> chromosomes = new ArrayList<Chromosome>(); in testIterator() local
192 final ArrayList<Chromosome> chromosomes = new ArrayList<Chromosome> (); in testSetPopulationLimitTooSmall() local
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| H A D | ElitisticListPopulationTest.java | 80 final List<Chromosome> chromosomes = Collections.emptyList(); in testChromosomeListConstructorTooLow() local
87 final List<Chromosome> chromosomes = Collections.emptyList(); in testChromosomeListConstructorTooHigh() local
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| /dports/math/apache-commons-math/commons-math3-3.6.1-src/src/main/java/org/apache/commons/math3/genetics/ |
| H A D | ListPopulation.java | 39 private List<Chromosome> chromosomes; field in ListPopulation
65 public ListPopulation(final List<Chromosome> chromosomes, final int populationLimit) in ListPopulation()
95 public void setChromosomes(final List<Chromosome> chromosomes) in setChromosomes()
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| H A D | TournamentSelection.java | 85 List<Chromosome> chromosomes = new ArrayList<Chromosome> (population.getChromosomes()); in tournament() local
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| H A D | ElitisticListPopulation.java | 51 public ElitisticListPopulation(final List<Chromosome> chromosomes, final int populationLimit, in ElitisticListPopulation()
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| /dports/biology/subread/subread-2.0.2-source/src/ |
| H A D | gen_long_chromosomes.c | 6 int chromosomes = atoi(argv[1]); in main() local
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| H A D | removeDupReads.c | 69 int parse_base_blocks(char * temp_prefix, chromosome_t * chromosomes, int threshold, int all_thread… in parse_base_blocks()
148 int parse_base_blocks_maybe_thread(char * temp_location, chromosome_t * chromosomes, int threshold,… in parse_base_blocks_maybe_thread()
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| H A D | SNPCalling.c | 999 … *in_fp, FILE * out_fp, char * chro_name , char * temp_prefix, chromosome_t * chromosomes , struct… in run_chromosome_search()
1122 …lists(char * in_FASTA_file, FILE * out_fp, char * temp_prefix, chromosome_t * chromosomes, struct … in parse_read_lists()
1173 chromosome_t * chromosomes; member
1191 …char * in_FASTA_file, char * out_BED_file, char * temp_prefix, chromosome_t * chromosomes, struct … in parse_read_lists_maybe_threads()
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| /dports/biology/generand/generand-0.1.2/ |
| H A D | generand.c | 76 unsigned int chromosomes = 22, in gen_vcf() local
161 chromosomes, in gen_sam() local
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| /dports/lang/solidity/solidity_0.8.11/test/yulPhaser/ |
| H A D | GeneticAlgorithms.cpp | 312 vector<Chromosome> chromosomes(populationSize, chromosome); in BOOST_FIXTURE_TEST_CASE() local
341 vector<Chromosome> chromosomes(populationSize, chromosome); in BOOST_FIXTURE_TEST_CASE() local
370 vector<Chromosome> chromosomes(populationSize, chromosome); in BOOST_FIXTURE_TEST_CASE() local
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| H A D | Population.cpp | 98 vector<Chromosome> chromosomes = { in BOOST_FIXTURE_TEST_CASE() local
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/copynumber/models/ |
| H A D | AlleleFractionSimulatedData.java | 59 final List<String> chromosomes = IntStream.range(0, numSegments) in AlleleFractionSimulatedData() local
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| H A D | CopyRatioSimulatedData.java | 55 final List<String> chromosomes = IntStream.range(0, numSegments) in CopyRatioSimulatedData() local
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| /dports/lang/solidity/solidity_0.8.11/tools/yulPhaser/ |
| H A D | Population.cpp | 67 vector<Chromosome> chromosomes; in makeRandom() local
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| H A D | Phaser.cpp | 327 vector<Chromosome> chromosomes; in buildFromStrings() local
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| /dports/biology/vt/vt-0.57721/ |
| H A D | gencode.cpp | 328 std::vector<GenomeInterval> chromosomes; in initialize() local
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| /dports/science/pagmo2/pagmo2-2.18.0/src/algorithms/ |
| H A D | nspso.cpp | 504 const std::vector<vector_double> &chromosomes, double delta) const in compute_niche_count() argument
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/ |
| H A D | ref_exclude.c | 75 static const char * chromosomes[ N_TRANS_NODES ] = variable
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| /dports/biology/py-macs2/MACS-2.2.7.1/MACS2/IO/ |
| H A D | CallPeakUnit.c | 1245 PyObject *chromosomes; member
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| H A D | CallPeakUnitPrecompiled.c | 1281 PyObject *chromosomes; member
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| /dports/www/orangehrm/orangehrm-4.9/symfony/lib/vendor/bjeavons/zxcvbn-php/src/Matchers/ |
| H A D | ranked_frequency_lists.json | 1 …n":8,"margaret":9,"dorothy":10,"lisa":11,"nancy":12,"karen":13,"betty":14,"helen":15,"sandra":16,"…
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