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Searched defs:contigIdx (Results 1 – 3 of 3) sorted by relevance

/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/evidence/
H A DAlignedAssemblyOrExcuse.java261 public static String formatContigName( final int assemblyId, final int contigIdx ) { in formatContigName()
269 private static String formatContigID( final int contigIdx ) { in formatContigID()
/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/uk/ac/sanger/artemis/io/
H A DIndexedGFFDocumentEntry.java1336 private int contigIdx = 0; field in IndexGFFFeatureEnumeration
/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/
H A DIntervalUtilsUnitTest.java1457 final int contigIdx = rdn.nextInt(CONTIG_NAMES.length); in lexicographicalOrderComparatorData() local