| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/clipping/ |
| H A D | ClippingOp.java | 199 final int copyStart = (start == 0) ? stop + 1 : 0; in applyHardClipBases() local
201 System.arraycopy(read.getBases(), copyStart, newBases, 0, newLength); in applyHardClipBases() local
202 System.arraycopy(read.getBaseQualities(), copyStart, newQuals, 0, newLength); in applyHardClipBases() local
216 …System.arraycopy(ReadUtils.getBaseInsertionQualities(read), copyStart, newBaseInsertionQuals, 0, n… in applyHardClipBases() local
217 …System.arraycopy(ReadUtils.getBaseDeletionQualities(read), copyStart, newBaseDeletionQuals, 0, new… in applyHardClipBases() local
|
| /dports/java/bouncycastle15/crypto-169/tls/src/main/java/org/bouncycastle/tls/ |
| H A D | DTLSReassembler.java | 66 int copyStart = Math.max(range.getStart(), fragment_offset); in contributeFragment() local
|
| /dports/devel/pear-Horde_Itip/Horde_Itip-2.1.2/lib/Horde/Itip/Event/ |
| H A D | Vtodo.php | 306 private function copyStart(Horde_Itip_Event $itip) function in Horde_Itip_Event_Vtodo
|
| H A D | Vevent.php | 275 private function copyStart(Horde_Itip_Event $itip) function in Horde_Itip_Event_Vevent
|
| /dports/converters/wkhtmltopdf/qt-5db36ec/src/3rdparty/webkit/Source/JavaScriptCore/runtime/ |
| H A D | JSString.cpp | 180 unsigned copyStart = std::max(substringStart, fiberStart); in substringFromRope() local
|
| /dports/lang/maude/maude-2.7.1/src/FullCompiler/ |
| H A D | runtime.cc | 160 char* copyStart = curNext; in ephemeralGC() local
|
| /dports/games/zdoom/zdoom-2.8.1/src/resourcefiles/ |
| H A D | file_wad.cpp | 122 const BYTE* copyStart = Stream.InternalBuffer-pos-1; in UncompressBlock() local
|
| /dports/games/ecwolf/ecwolf-1.3.3-src/src/resourcefiles/ |
| H A D | file_wad.cpp | 124 const BYTE* copyStart = Stream.InternalBuffer-pos-1; in UncompressBlock() local
|
| /dports/lang/spidermonkey60/firefox-60.9.0/mfbt/ |
| H A D | BufferList.h | 558 size_t copyStart = aIter.mSegment; in Extract() local
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/sqlite_dbi/ |
| H A D | SQLiteSequenceDbi.cpp | 103 int copyStart = pos - sstart; in getSequenceData() local
|
| /dports/www/firefox-esr/firefox-91.8.0/mfbt/ |
| H A D | BufferList.h | 633 size_t copyStart = aIter.mSegment; in Extract() local
|
| /dports/www/firefox/firefox-99.0/mfbt/ |
| H A D | BufferList.h | 633 size_t copyStart = aIter.mSegment; in Extract() local
|
| /dports/mail/thunderbird/thunderbird-91.8.0/mfbt/ |
| H A D | BufferList.h | 633 size_t copyStart = aIter.mSegment; in Extract() local
|
| /dports/lang/spidermonkey78/firefox-78.9.0/mfbt/ |
| H A D | BufferList.h | 598 size_t copyStart = aIter.mSegment; in Extract() local
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/mysql_dbi/ |
| H A D | MysqlSequenceDbi.cpp | 110 int copyStart = pos - sstart; in getSequenceData() local
|
| /dports/java/eclipse/eclipse.platform.releng.aggregator-R4_16/eclipse.jdt.core/org.eclipse.jdt.core/compiler/org/eclipse/jdt/internal/compiler/flow/ |
| H A D | UnconditionalFlowInfo.java | 2179 int vectorIndex, length, copyStart; in unconditionalFieldLessCopy() local
2302 public void growSpace(int newLength, int copyStart, int copyLength) { in growSpace()
|
| /dports/astro/opencpn/OpenCPN-5.2.4/plugins/grib_pi/src/bzip2/ |
| H A D | blocksort.c | 809 Int32 copyStart[256]; in mainSort() local
|
| /dports/games/libretro-play/Play--3cd0a367b5e24c061a6310c68c9fa7f6b531ebd4/deps/Dependencies/bzip2-1.0.6/ |
| H A D | blocksort.c | 762 Int32 copyStart[256]; in mainSort() local
|
| /dports/lang/perl5.32/perl-5.32.1/cpan/Compress-Raw-Bzip2/bzip2-src/ |
| H A D | blocksort.c | 762 Int32 copyStart[256]; in mainSort() local
|
| /dports/lang/perl5.34/perl-5.34.0/cpan/Compress-Raw-Bzip2/bzip2-src/ |
| H A D | blocksort.c | 762 Int32 copyStart[256]; in mainSort() local
|
| /dports/lang/perl5.30/perl-5.30.3/cpan/Compress-Raw-Bzip2/bzip2-src/ |
| H A D | blocksort.c | 762 Int32 copyStart[256]; in mainSort() local
|
| /dports/games/libretro-fuse/fuse-libretro-8b51f87/bzip2/ |
| H A D | blocksort.c | 762 Int32 copyStart[256]; in mainSort() local
|
| /dports/games/libretro-gw/gw-libretro-2be30ba/bzip2/ |
| H A D | blocksort.c | 762 Int32 copyStart[256]; in mainSort() local
|
| /dports/devel/boost-docs/boost_1_72_0/tools/boost_install/test/iostreams/bzip2-1.0.6/ |
| H A D | blocksort.c | 762 Int32 copyStart[256]; in mainSort() local
|
| /dports/multimedia/mkclean/mkclean-0.8.7/libmatroska2/bzip2/ |
| H A D | blocksort.c | 762 Int32 copyStart[256]; in mainSort() local
|