| /dports/math/cgal/CGAL-5.3/include/CGAL/ |
| H A D | vcm_estimate_edges.h | 47 vcm_is_on_feature_edge (std::array<FT,6> &cov, in vcm_is_on_feature_edge()
59 double r = eigenvalues[1] / (eigenvalues[0] + eigenvalues[1] + eigenvalues[2]); in vcm_is_on_feature_edge() local
70 vcm_is_on_feature_edge (std::array<FT,6> &cov, in vcm_is_on_feature_edge()
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| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | KmerCoverage.java | 802 public static int[] generateCoverage(Read r, KCountArray kca, int k) { in generateCoverage()
869 public static int[] generateCoverageLong(Read r, KCountArray kca, int k) { in generateCoverageLong()
965 Read r=reads.get(rnum); in countInThread() local
979 int[] cov=getCoverageAndIncrementHistogram(r); in countInThread() local
994 int[] cov=getCoverageAndIncrementHistogram(r2); in countInThread() local
1021 private int[] getCoverageAndIncrementHistogram(Read r){ in getCoverageAndIncrementHistogram()
1027 int[] cov=generateCoverage(r, kca, k); in getCoverageAndIncrementHistogram() local
1039 private String toFastaString(Read r){ in toFastaString()
1050 int[] cov=generateCoverage(r, kca, k); in toFastaString() local
1114 private ByteBuilder toFastqString(Read r){ in toFastqString()
[all …]
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| H A D | KmerNormalize.java | 2121 private static int correctErrors(Read r, int[] cov, long[] kmers, KCountArray kca, final int k, in correctErrors()
2172 private static int markErrors(Read r, int[] cov, long[] kmers, KCountArray kca, final int k, in markErrors()
2257 …private static void regenerateKmersAndCoverage(final Read r, final long[] kmers, final int[] cov, … in regenerateKmersAndCoverage()
2304 …private static int correctErrorsFromLeft(final Read r, final int[] cov, final long[] kmers, final … in correctErrorsFromLeft()
2351 …private static int correctErrorsFromRight(final Read r, final int[] cov, final long[] kmers, final… in correctErrorsFromRight()
2398 private static int markErrorsFromLeft(final Read r, final int[] cov, final int k, in markErrorsFromLeft()
2423 private static int markErrorsFromRight(final Read r, final int[] cov, final int k, in markErrorsFromRight()
2448 …private static boolean correctErrorFromLeft(final Read r, final int[] cov, final long[] kmers, fin… in correctErrorFromLeft()
2535 …private static boolean correctErrorFromRight(final Read r, final int[] cov, final long[] kmers, fi… in correctErrorFromRight()
3196 Read r=reads.get(rnum); in normalizeInThreadByCountup() local
[all …]
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| /dports/math/igraph/igraph-0.9.5/vendor/glpk/draft/ |
| H A D | glpios07.c | 140 double y, int cov[], double *_alfa, double *_beta) in cover2()
173 double y, int cov[], double *_alfa, double *_beta) in cover3()
208 double y, int cov[], double *_alfa, double *_beta) in cover4()
245 double y, int cov[], double *alfa, double *beta) in cover()
317 { int cov[1+4], j, k, nb, newlen, r; in lpx_cover_cut() local
506 double r, *val, *work; in ios_cov_gen() local
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| /dports/audio/praat/praat-6.2.03/external/glpk/ |
| H A D | glpios07.c | 142 double y, int cov[], double *_alfa, double *_beta) in cover2()
175 double y, int cov[], double *_alfa, double *_beta) in cover3()
210 double y, int cov[], double *_alfa, double *_beta) in cover4()
247 double y, int cov[], double *alfa, double *beta) in cover()
320 { int cov[1+4], j, k, nb, newlen, r; in lpx_cover_cut() local
512 double r, *val, *work; in ios_cov_gen() local
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| /dports/math/glpk/glpk-5.0/src/draft/ |
| H A D | glpios07.c | 140 double y, int cov[], double *_alfa, double *_beta) in cover2()
173 double y, int cov[], double *_alfa, double *_beta) in cover3()
208 double y, int cov[], double *_alfa, double *_beta) in cover4()
245 double y, int cov[], double *alfa, double *beta) in cover()
317 { int cov[1+4], j, k, nb, newlen, r; in lpx_cover_cut() local
506 double r, *val, *work; in ios_cov_gen() local
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| /dports/net/ntp/ntp-4.2.8p15/scripts/monitoring/ |
| H A D | lr.pl | 98 sub r() subroutine
110 sub cov() subroutine
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| /dports/math/gsl/gsl-2.7/doc/examples/ |
| H A D | robfit.c | 8 gsl_vector *c, gsl_matrix *cov) in dofit()
26 gsl_matrix *X, *cov; in main() local
30 gsl_rng *r; in main() local
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| /dports/math/gsl/gsl-2.7/multifit/ |
| H A D | multirobust.c | 270 gsl_multifit_robust_weights(const gsl_vector *r, gsl_vector *wts, in gsl_multifit_robust_weights()
313 gsl_matrix * cov, in gsl_multifit_robust()
483 const gsl_matrix * cov, double *y, double *y_err) in gsl_multifit_robust_est()
509 const gsl_vector * c, gsl_vector * r, in gsl_multifit_robust_residuals()
608 robust_madsigma(const gsl_vector *r, const size_t p, gsl_vector *workn) in robust_madsigma()
650 robust_robsigma(const gsl_vector *r, const double s, in robust_robsigma()
738 robust_covariance(const double sigma, gsl_matrix *cov, in robust_covariance()
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| H A D | multilinear.c | 39 gsl_matrix * cov, in gsl_multifit_linear()
70 gsl_matrix * cov, in gsl_multifit_linear_tsvd()
192 const gsl_matrix * cov, double *y, double *y_err) in gsl_multifit_linear_est()
261 const gsl_vector *c, gsl_vector *r) in gsl_multifit_linear_residuals()
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| /dports/biology/bbmap/bbmap/current/pacbio/ |
| H A D | StackSites2.java | 85 final ArrayList<CoverageArray> cov; in stack() local
121 Read r=reads.get(0); in stack() local
281 …e, ArrayList<CoverageArray> pcov, ArrayList<CoverageArray> truePcov, ArrayList<CoverageArray> cov){ in finish()
370 …tic boolean retainSite(SiteScoreR ssr, CoverageArray pcov, CoverageArray tpcov, CoverageArray cov){ in retainSite()
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| /dports/www/firefox-esr/firefox-91.8.0/gfx/skia/skia/src/core/ |
| H A D | SkVMBlitter.cpp | 89 struct Color { skvm::I32 r,g,b,a; }; member
126 skvm::I32 r = extract(bgr, 11, splat(0b011'111)), in unpack_565() local
139 skvm::I32 r = div255(mul(c.r, splat(31))), in pack_565() local
193 auto load_coverage = [&](Color* cov) { in Builder()
224 Color cov; in Builder() local
269 Color cov; in Builder() local
384 void blitAntiH(int x, int y, const SkAlpha cov[], const int16_t runs[]) override { in blitAntiH()
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| /dports/www/firefox/firefox-99.0/gfx/skia/skia/src/core/ |
| H A D | SkVMBlitter.cpp | 89 struct Color { skvm::I32 r,g,b,a; }; member
126 skvm::I32 r = extract(bgr, 11, splat(0b011'111)), in unpack_565() local
139 skvm::I32 r = div255(mul(c.r, splat(31))), in pack_565() local
193 auto load_coverage = [&](Color* cov) { in Builder()
224 Color cov; in Builder() local
269 Color cov; in Builder() local
384 void blitAntiH(int x, int y, const SkAlpha cov[], const int16_t runs[]) override { in blitAntiH()
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| /dports/mail/thunderbird/thunderbird-91.8.0/gfx/skia/skia/src/core/ |
| H A D | SkVMBlitter.cpp | 89 struct Color { skvm::I32 r,g,b,a; }; member
126 skvm::I32 r = extract(bgr, 11, splat(0b011'111)), in unpack_565() local
139 skvm::I32 r = div255(mul(c.r, splat(31))), in pack_565() local
193 auto load_coverage = [&](Color* cov) { in Builder()
224 Color cov; in Builder() local
269 Color cov; in Builder() local
384 void blitAntiH(int x, int y, const SkAlpha cov[], const int16_t runs[]) override { in blitAntiH()
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| /dports/lang/spidermonkey78/firefox-78.9.0/gfx/skia/skia/src/core/ |
| H A D | SkVMBlitter.cpp | 89 struct Color { skvm::I32 r,g,b,a; }; member
126 skvm::I32 r = extract(bgr, 11, splat(0b011'111)), in unpack_565() local
139 skvm::I32 r = div255(mul(c.r, splat(31))), in pack_565() local
193 auto load_coverage = [&](Color* cov) { in Builder()
224 Color cov; in Builder() local
269 Color cov; in Builder() local
384 void blitAntiH(int x, int y, const SkAlpha cov[], const int16_t runs[]) override { in blitAntiH()
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| /dports/math/cgal/CGAL-5.3/examples/Point_set_processing_3/ |
| H A D | edges_example.cpp | 35 r = 0.1; in main() local
36 std::vector<Covariance> cov; in main() local
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| /dports/math/R-cran-robustbase/robustbase/R/ |
| H A D | tolEllipse.R | 25 function(x, m.cov = covMcd(x), cutoff = NULL, id.n = NULL,
51 ellips <- function(loc, cov) { argument
66 r <- matrix(c(cos(alfa), - sin(alfa), sin(alfa), cos(alfa)), ncol = 2) functionVar
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| /dports/math/apache-commons-math/commons-math3-3.6.1-src/src/main/java/org/apache/commons/math3/fitting/leastsquares/ |
| H A D | AbstractEvaluation.java | 66 final RealMatrix cov = this.getCovariances(covarianceSingularityThreshold); in getSigma() local
83 final ArrayRealVector r = new ArrayRealVector(this.getResiduals()); in getCost() local
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| /dports/math/saga/saga-8.1.3/saga-gis/src/tools/imagery/imagery_tools/ |
| H A D | image_quality_index.cpp | 191 double r, l, c; in On_Execute() local
220 bool CImage_Quality_Index::Get_Quality(int x, int y, double &r, double &l, double &c) in Get_Quality()
241 double cov = 0.0; in Get_Quality() local
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| /dports/editors/joe/joe-4.6/joe/ |
| H A D | umath.c | 704 double r; in m_lr() local
705 double cov; in m_lr() local
742 double r; in m_Lr() local
743 double cov; in m_Lr() local
780 double r; in m_lR() local
781 double cov; in m_lR() local
818 double r; in m_LR() local
856 double r; in m_rlr() local
894 double r; in m_rLr() local
932 double r; in m_rlR() local
[all …]
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| /dports/math/pspp/pspp-1.4.1/src/language/stats/ |
| H A D | correlations.c | 102 for (size_t r = 0 ; r < corr->n_vars_total ; ++r) in output_descriptives() local
160 for (size_t r = 0; r < corr->n_vars1; r++) in output_correlation() local
167 for (int r = 0; r < corr->n_vars1; r++) in output_correlation() local
183 double cov = gsl_matrix_get (cv, r, col_index); in output_correlation() local
208 run_corr (struct casereader *r, const struct corr_opts *opts, const struct corr *corr) in run_corr()
214 struct covariance *cov = covariance_2pass_create (corr->n_vars_total, corr->vars, in run_corr() local
417 struct casereader *r = casereader_clone (group); in cmd_correlation() local
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| /dports/science/cantera/cantera-2.5.1-611-gc4d6ecc15/samples/matlab/ |
| H A D | surfreactor.m | 25 r = IdealGasReactor(gas); variable
61 cov = zeros([nSteps nSurfSp]); variable
|
| /dports/science/InsightToolkit/ITK-5.0.1/Modules/Numerics/Statistics/include/ |
| H A D | itkGaussianMembershipFunction.hxx | 88 ::SetCovariance(const CovarianceMatrixType & cov) in SetCovariance()
170 for(MeasurementVectorSizeType r = 0; r < measurementVectorSize; ++r) in Evaluate() local
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| H A D | itkMahalanobisDistanceMembershipFunction.hxx | 73 ::SetCovariance(const CovarianceMatrixType & cov) in SetCovariance()
154 for (unsigned int r = 0; r < measurementVectorSize; ++r) in Evaluate() local
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| /dports/math/py-Pyomo/Pyomo-6.1.2/pyomo/contrib/parmest/examples/rooney_biegler/ |
| H A D | scipy_comparison.py | 67 r = residual(theta_hat, t, y) variable
76 cov = sigre * np.linalg.inv(np.matmul(sol.jac.T, sol.jac)) variable
|