| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/read/ |
| H A D | ReadUtilsIntegrationTest.java | 48 final boolean createMD5, in testCreatePathSAMWriter()
65 … (outputPath, referencePath, samReader.getFileHeader(), preSorted, createIndex, createMD5)) { in testCreatePathSAMWriter() argument
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| H A D | ReadUtilsUnitTest.java | 491 final boolean createMD5, in testCreateLegacySAMWriter()
502 … (outputFile, referenceFile, samReader.getFileHeader(), preSorted, createIndex, createMD5)) { in testCreateLegacySAMWriter() argument
533 final boolean createMD5, in testCreatePathSAMWriter()
557 … (outputPath, referencePath, samReader.getFileHeader(), preSorted, createIndex, createMD5)) { in testCreatePathSAMWriter() argument
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| /dports/audio/libsidplay2/sidplay-libs-2.1.1/libsidutils/src/ |
| H A D | SidTuneMod.cpp | 23 const char *SidTuneMod::createMD5(char *md5) in createMD5() function in SidTuneMod
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/engine/ |
| H A D | GATKToolUnitTest.java | 599 final boolean createMD5 // unused in testCreateVCFWriterDefaults()
774 final boolean createMD5) throws IOException { in testCreateVCFWriterWithOptions()
789 … Assert.assertEquals(outFileMD5.exists(), createMD5, "The createMD5 argument was not honored"); in testCreateVCFWriterWithOptions() local
807 final boolean createMD5) throws IOException { in testCreateVCFWriterLenientTrue()
822 … Assert.assertEquals(outFileMD5.exists(), createMD5, "The createMD5 argument was not honored"); in testCreateVCFWriterLenientTrue() local
831 final boolean createMD5) throws IOException { in testCreateVCFWriterLenientFalse()
867 final boolean createMD5) throws IOException in testCreateVCFWriterWithNoSequenceDictionary()
881 … Assert.assertEquals(outFileMD5.exists(), createMD5, "The createMD5 argument was not honored"); in testCreateVCFWriterWithNoSequenceDictionary() local
889 final boolean createMD5, in setupVCFWriter()
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| /dports/audio/ocp/ocp-0.2.90/playsid/libsidplayfp-git/src/sidtune/ |
| H A D | SidTuneBase.h | 141 virtual const char *createMD5(char *) { return nullptr; } in createMD5() function
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| H A D | PSID.cpp | 361 const char *PSID::createMD5(char *md5) in createMD5() function in libsidplayfp::PSID
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| /dports/audio/libsidplayfp/libsidplayfp-2.3.1/src/sidtune/ |
| H A D | SidTuneBase.h | 159 virtual const char *createMD5(char *) { return nullptr; } in createMD5() function
|
| H A D | PSID.cpp | 361 const char *PSID::createMD5(char *md5) in createMD5() function in libsidplayfp::PSID
|
| /dports/audio/libsidplayfp/libsidplayfp-2.3.1/src/sidplayfp/ |
| H A D | SidTune.cpp | 147 const char* SidTune::createMD5(char *md5) in createMD5() function in SidTune
|
| /dports/java/bouncycastle15/crypto-169/core/src/main/java/org/bouncycastle/crypto/util/ |
| H A D | DigestFactory.java | 107 public static Digest createMD5() in createMD5() method in DigestFactory
|
| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/haplotype/ |
| H A D | HaplotypeBAMWriterUnitTest.java | 115 final boolean createMD5 in testWriteToFile()
133 Assert.assertEquals(expectedMD5File.exists(), createMD5); in testWriteToFile() local
|
| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/variant/ |
| H A D | GATKVariantContextUtilsUnitTest.java | 1575 final boolean createMD5) throws IOException { in testCreateVCFWriterWithOptions()
1586 createMD5, in testCreateVCFWriterWithOptions() argument
1596 … Assert.assertEquals(outFileMD5.exists(), createMD5, "The createMD5 argument was not honored"); in testCreateVCFWriterWithOptions() local
1638 final boolean createMD5) throws IOException { in testCreateVCFWriterLenientTrue()
1649 createMD5, in testCreateVCFWriterLenientTrue() argument
1660 … Assert.assertEquals(outFileMD5.exists(), createMD5, "The createMD5 argument was not honored"); in testCreateVCFWriterLenientTrue() local
1668 final boolean createMD5) throws IOException { in testCreateVCFWriterLenientFalse()
1679 createMD5, in testCreateVCFWriterLenientFalse() argument
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/read/ |
| H A D | ReadUtils.java | 921 final boolean createMD5) in createCommonSAMWriter()
950 final boolean createMD5) in createCommonSAMWriter()
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/variant/ |
| H A D | GATKVariantContextUtils.java | 92 final boolean createMD5, in createVCFWriter()
|