| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align/ |
| H A D | test_alignment_dp_matrix_navigator.h | 75 TDPMatrix dpMatrix; in testAlignmentDPMatrixNavigatorScoreMarixInitUnbanded() local
96 TDPMatrix dpMatrix; in testAlignmentDPMatrixNavigatorScoreMarixSparseInitUnbanded() local
223 TDPMatrix dpMatrix; in testAlignmentDPMatrixNavigatorScoreMarixGoNextCell() local
293 TDPMatrix dpMatrix; in testAlignmentDPMatrixNavigatorScoreMarixSparseGoNextCell() local
364 TDPMatrix dpMatrix; in testAlignmentDPScoreMatrixNavigatorAssignValue() local
386 TDPMatrix dpMatrix; in testAlignmentDPScoreMatrixNavigatorValue() local
413 TDPMatrix dpMatrix; in testAlignmentDPScoreMatrixNavigatorPreviousCellHorizontal() local
439 TDPMatrix dpMatrix; in testAlignmentDPScoreMatrixNavigatorCoordinate() local
462 TDPMatrix dpMatrix; in testAlignmentDPScoreMatrixNavigatorContainer() local
584 TDPMatrix dpMatrix; in SEQAN_DEFINE_TEST() local
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| H A D | test_alignment_dp_matrix.h | 86 TDPMatrix dpMatrix; in testAlignmentDPMatrixDataHost() local
109 TDPMatrix dpMatrix; in testAlignmentDPMatrixDataLengths() local
129 TDPMatrix dpMatrix; in testAlignmentDPMatrixDataFactors() local
157 DPMatrix_<char, TSpec> dpMatrix; in testAlignmentDPMatrixSetLength() local
174 DPMatrix_<char, TSpec> dpMatrix; in testAlignmentDPMatrixLengthDimension() local
191 DPMatrix_<char, TSpec> dpMatrix; in testAlignmentDPMatrixEmpty() local
207 DPMatrix_<char, FullDPMatrix> dpMatrix; in testAlignmentDPMatrixClear() local
233 DPMatrix_<char, FullDPMatrix> dpMatrix; in testAlignmentDPMatrixHost() local
247 DPMatrix_<char, FullDPMatrix> dpMatrix; in testAlignmentDPMatrixSetHost() local
444 DPMatrix_<int, FullDPMatrix> dpMatrix; in SEQAN_DEFINE_TEST() local
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
| H A D | dp_matrix_sparse.h | 97 resize(DPMatrix_<TValue, SparseDPMatrix> & dpMatrix) in resize()
110 resize(DPMatrix_<TValue, SparseDPMatrix> & dpMatrix, in resize()
128 value(DPMatrix_<TValue, SparseDPMatrix> & dpMatrix, in value()
137 value(DPMatrix_<TValue, SparseDPMatrix> const & dpMatrix, in value()
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| H A D | dp_matrix_navigator_score_matrix_sparse.h | 103 DPMatrix_<TValue, SparseDPMatrix> & dpMatrix, in _init()
117 DPMatrix_<TValue, SparseDPMatrix> & dpMatrix, in _init()
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| H A D | dp_matrix_navigator_trace_matrix.h | 104 DPMatrix_<TValue, FullDPMatrix> & dpMatrix, in _init()
121 DPMatrix_<TValue, FullDPMatrix> & dpMatrix, in _init()
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| H A D | dp_matrix_navigator_score_matrix.h | 104 DPMatrix_<TValue, FullDPMatrix> & dpMatrix, in _init()
118 DPMatrix_<TValue, FullDPMatrix> & dpMatrix, in _init()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/ |
| H A D | dp_matrix_sparse.h | 82 resize(DPMatrix_<TValue, SparseDPMatrix, THost> & dpMatrix) in resize()
95 resize(DPMatrix_<TValue, SparseDPMatrix, THost> & dpMatrix, in resize()
113 value(DPMatrix_<TValue, SparseDPMatrix, THost> & dpMatrix, in value()
122 value(DPMatrix_<TValue, SparseDPMatrix, THost> const & dpMatrix, in value()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/ |
| H A D | dp_matrix_sparse.h | 82 resize(DPMatrix_<TValue, SparseDPMatrix, THost> & dpMatrix) in resize()
95 resize(DPMatrix_<TValue, SparseDPMatrix, THost> & dpMatrix, in resize()
113 value(DPMatrix_<TValue, SparseDPMatrix, THost> & dpMatrix, in value()
122 value(DPMatrix_<TValue, SparseDPMatrix, THost> const & dpMatrix, in value()
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| /dports/math/chuffed/chuffed-e04bedd/chuffed/globals/ |
| H A D | EdExplFinder.h | 61 const vec<int> *dpMatrix; variable
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| H A D | edit_distance.cpp | 202 vec<int> dpMatrix; member in EditDistance
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/misc/ |
| H A D | svg.h | 53 int dpMatrix; member
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/misc/ |
| H A D | svg.h | 53 int dpMatrix; member
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/misc/ |
| H A D | svg.h | 53 int dpMatrix; member
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| /dports/biology/seqan1/seqan-1.3.1/seqan/misc/ |
| H A D | misc_svg.h | 51 int dpMatrix; member
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