| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align/ |
| H A D | test_alignment_dp_traceback.h | 85 DPScout_<int, Default> dpScout; in SEQAN_DEFINE_TEST() local
184 DPScout_<int, Default> dpScout; in SEQAN_DEFINE_TEST() local
239 DPScout_<int, Default> dpScout; in SEQAN_DEFINE_TEST() local
330 DPScout_<int, Default> dpScout; in SEQAN_DEFINE_TEST() local
372 DPScout_<int, Default> dpScout; in SEQAN_DEFINE_TEST() local
419 DPScout_<int, Default> dpScout; in SEQAN_DEFINE_TEST() local
467 DPScout_<int, Default> dpScout; in SEQAN_DEFINE_TEST() local
517 DPScout_<int, Default> dpScout; in SEQAN_DEFINE_TEST() local
563 DPScout_<int, Default> dpScout; in SEQAN_DEFINE_TEST() local
616 DPScout_<int, Default> dpScout; in SEQAN_DEFINE_TEST() local
[all …]
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
| H A D | dp_scout.h | 204 _scoutBestScore(DPScout_<TDPCell, TSpec> & dpScout, in _scoutBestScore()
221 _scoutBestScore(DPScout_<TDPCell, TSpec> & dpScout, in _scoutBestScore()
233 _scoutBestScore(DPScout_<TDPCell, TSpec> & dpScout, in _scoutBestScore()
247 maxScore(DPScout_<TDPCell, TScoutSpec> const & dpScout) in maxScore()
259 maxHostPosition(DPScout_<TDPCell, TScoutSpec> const & dpScout) in maxHostPosition()
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| H A D | dp_algorithm_impl.h | 1340 DPScout_<DPCell_<TScoreValue, AffineGaps>, TDPScoutSpec> const & dpScout) in _correctTraceValue()
1358 DPScout_<DPCell_<TScoreValue, DynamicGaps>, TDPScoutSpec> const & dpScout) in _correctTraceValue()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/ |
| H A D | dp_scout.h | 169 _scoutBestScore(DPScout_<TDPCell, TSpec> & dpScout, in _scoutBestScore()
185 _scoutBestScore(DPScout_<TDPCell, TSpec> & dpScout, in _scoutBestScore()
196 _scoutBestScore(DPScout_<TDPCell, TSpec> & dpScout, in _scoutBestScore()
210 maxScore(DPScout_<TDPCell, TScoutSpec> const & dpScout) in maxScore()
222 maxHostPosition(DPScout_<TDPCell, TScoutSpec> const & dpScout) in maxHostPosition()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/ |
| H A D | dp_scout.h | 169 _scoutBestScore(DPScout_<TDPCell, TSpec> & dpScout, in _scoutBestScore()
185 _scoutBestScore(DPScout_<TDPCell, TSpec> & dpScout, in _scoutBestScore()
196 _scoutBestScore(DPScout_<TDPCell, TSpec> & dpScout, in _scoutBestScore()
210 maxScore(DPScout_<TDPCell, TScoutSpec> const & dpScout) in maxScore()
222 maxHostPosition(DPScout_<TDPCell, TScoutSpec> const & dpScout) in maxHostPosition()
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align_split/ |
| H A D | dp_scout_split.h | 105 _scoutBestScore(DPScout_<TDPCell, SplitAlignmentScout> & dpScout, in _scoutBestScore()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/align_split/ |
| H A D | dp_scout_split.h | 106 _scoutBestScore(DPScout_<TDPCell, SplitAlignmentScout> & dpScout, in _scoutBestScore()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align_split/ |
| H A D | dp_scout_split.h | 106 _scoutBestScore(DPScout_<TDPCell, SplitAlignmentScout> & dpScout, in _scoutBestScore()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 257 _verticalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _verticalCellInitialization()
271 _horizontalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _horizontalCellInitialization()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 257 _verticalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _verticalCellInitialization()
271 _horizontalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _horizontalCellInitialization()
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 241 _verticalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _verticalCellInitialization()
255 _horizontalCellInitialization(DPScout_<TDPCell, BandedChainAlignmentScout> const & dpScout, in _horizontalCellInitialization()
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