| /dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/ |
| H A D | read_fkt.c | 44 uint32_t elem_bits, boff, row_len; in read_bool() local
72 uint32_t elem_bits, boff, row_len; in read_bool_ptr() local
106 uint32_t elem_bits, boff, row_len; in read_uint8() local
134 uint32_t elem_bits, boff, row_len; in read_uint8_ptr() local
168 uint32_t elem_bits, boff, row_len; in read_uint32() local
196 uint32_t elem_bits, boff, row_len; in read_uint32_ptr() local
230 uint32_t elem_bits, boff, row_len; in read_int32() local
258 uint32_t elem_bits, boff, row_len; in read_int32_ptr() local
292 uint32_t elem_bits, boff, row_len; in read_int64() local
320 uint32_t elem_bits, boff, row_len; in read_int64_ptr() local
[all …]
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/ |
| H A D | NGS_Cursor.c | 293 uint32_t *elem_bits, in NGS_CursorCellDataDirect()
348 uint32_t elem_bits, boff, row_len; in NGS_CursorGetString() local
380 uint32_t elem_bits, boff, row_len; in NGS_CursorGetInt64() local
413 uint32_t elem_bits, boff, row_len; in NGS_CursorGetUInt64() local
447 uint32_t elem_bits, boff, row_len; in NGS_CursorGetInt32() local
477 uint32_t elem_bits, boff, row_len; in NGS_CursorGetUInt32() local
507 uint32_t elem_bits, boff, row_len; in NGS_CursorGetBool() local
537 uint32_t elem_bits, boff, row_len; in NGS_CursorGetChar() local
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| H A D | CSRA1_Reference.c | 251 uint32_t elem_bits, boff, row_len; in CountRows() local
528 uint32_t elem_bits, boff, row_len; in CSRA1_ReferenceGetAlignmentCount() local
575 uint32_t elem_bits, boff, row_len; in LoadOverlaps() local
607 uint32_t elem_bits, boff, row_len; in LoadOverlaps() local
904 uint32_t elem_bits, boff, row_len; in CSRA1_ReferenceFind() local
1133 uint32_t elem_bits, boff; in CSRA1_ReferenceIteratorNext() local
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs/ |
| H A D | NGS_Cursor.c | 293 uint32_t *elem_bits, in NGS_CursorCellDataDirect()
348 uint32_t elem_bits, boff, row_len; in NGS_CursorGetString() local
380 uint32_t elem_bits, boff, row_len; in NGS_CursorGetInt64() local
413 uint32_t elem_bits, boff, row_len; in NGS_CursorGetUInt64() local
447 uint32_t elem_bits, boff, row_len; in NGS_CursorGetInt32() local
477 uint32_t elem_bits, boff, row_len; in NGS_CursorGetUInt32() local
507 uint32_t elem_bits, boff, row_len; in NGS_CursorGetBool() local
537 uint32_t elem_bits, boff, row_len; in NGS_CursorGetChar() local
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| H A D | CSRA1_Reference.c | 251 uint32_t elem_bits, boff, row_len; in CountRows() local
528 uint32_t elem_bits, boff, row_len; in CSRA1_ReferenceGetAlignmentCount() local
575 uint32_t elem_bits, boff, row_len; in LoadOverlaps() local
607 uint32_t elem_bits, boff, row_len; in LoadOverlaps() local
904 uint32_t elem_bits, boff, row_len; in CSRA1_ReferenceFind() local
1133 uint32_t elem_bits, boff; in CSRA1_ReferenceIteratorNext() local
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/vdb/ |
| H A D | test-vdb-slow.cpp | 46 const uint32_t elem_bits = 4; in FIXTURE_TEST_CASE() local
56 uint32_t elem_bits; in FIXTURE_TEST_CASE() local
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| H A D | test-blob-val.cpp | 120 uint32_t elem_bits; in FIXTURE_TEST_CASE() local
142 uint32_t elem_bits; in FIXTURE_TEST_CASE() local
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/vdb/ |
| H A D | test-vdb-slow.cpp | 46 const uint32_t elem_bits = 4; in FIXTURE_TEST_CASE() local
56 uint32_t elem_bits; in FIXTURE_TEST_CASE() local
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| H A D | test-blob-val.cpp | 120 uint32_t elem_bits; in FIXTURE_TEST_CASE() local
142 uint32_t elem_bits; in FIXTURE_TEST_CASE() local
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/ |
| H A D | split.c | 118 static rc_t VBlobSplit_v1(VBlob **lhs, const VBlob *self, uint32_t index, uint32_t elem_bits) { in VBlobSplit_v1()
217 static rc_t VBlobSplit_v2(VBlob **lhs, const VBlob *self, uint32_t index, uint32_t elem_bits, const… in VBlobSplit_v2()
337 …PORT rc_t CC VBlobBufferSplit(VBlob **lhs, const VBlob *self, uint32_t index, uint32_t elem_bits) { in VBlobBufferSplit()
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| H A D | phys-cmn.c | 357 rc_t VPhysicalReadKColumn ( VPhysical *self, VBlob **vblob, int64_t id, uint32_t elem_bits ) in VPhysicalReadKColumn()
524 rc_t VPhysicalReadStatic ( VPhysical *self, VBlob **vblob, int64_t id, uint32_t elem_bits ) in VPhysicalReadStatic()
610 rc_t VPhysicalReadBlob ( VPhysical *self, VBlob **vblob, int64_t id, uint32_t elem_bits ) in VPhysicalReadBlob()
672 uint32_t elem_bits; in VPhysicalProdRead() local
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| H A D | column-cmn.c | 215 …uint32_t *elem_bits, const void **base, uint32_t *boff, uint32_t *row_len, uint32_t *repeat_count ) in VColumnReadCachedBlob()
229 …uint32_t *elem_bits, const void **base, uint32_t *boff, uint32_t *row_len, uint32_t * repeat_count… in VColumnReadBlob()
262 uint32_t *elem_bits, const void **base, uint32_t *boff, uint32_t *row_len, in VColumnRead()
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| H A D | phys.c | 64 rc_t VPhysicalRead ( VPhysical *self, VBlob **vblob, int64_t id, uint32_t cnt, uint32_t elem_bits ) in VPhysicalRead()
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| H A D | cursor-cmn.c | 75 LIB_EXPORT rc_t CC VCursorWrite ( VCursor *self, uint32_t col_idx, bitsz_t elem_bits, const void *b… in VCursorWrite()
104 LIB_EXPORT rc_t CC VCursorRead ( const VCursor *self, uint32_t col_idx, uint32_t elem_bits, void *b… in VCursorRead()
109 uint32_t elem_bits, void *buffer, uint32_t blen, uint32_t *row_len ) in VCursorReadDirect()
114 uint32_t elem_bits, uint32_t start, void *buffer, uint32_t off, in VCursorReadBits()
120 uint32_t elem_bits, uint32_t start, void *buffer, uint32_t off, in VCursorReadBitsDirect()
126 uint32_t *elem_bits, const void **base, uint32_t *boff, uint32_t *row_len ) in VCursorCellData()
131 uint32_t *elem_bits, const void **base, uint32_t *boff, uint32_t *row_len ) in VCursorCellDataDirect()
140 bitsz_t elem_bits, const void *buffer, bitsz_t boff, uint64_t row_len ) in VCursorDefault()
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/vdb/ |
| H A D | split.c | 118 static rc_t VBlobSplit_v1(VBlob **lhs, const VBlob *self, uint32_t index, uint32_t elem_bits) { in VBlobSplit_v1()
217 static rc_t VBlobSplit_v2(VBlob **lhs, const VBlob *self, uint32_t index, uint32_t elem_bits, const… in VBlobSplit_v2()
337 …PORT rc_t CC VBlobBufferSplit(VBlob **lhs, const VBlob *self, uint32_t index, uint32_t elem_bits) { in VBlobBufferSplit()
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| H A D | phys-cmn.c | 357 rc_t VPhysicalReadKColumn ( VPhysical *self, VBlob **vblob, int64_t id, uint32_t elem_bits ) in VPhysicalReadKColumn()
524 rc_t VPhysicalReadStatic ( VPhysical *self, VBlob **vblob, int64_t id, uint32_t elem_bits ) in VPhysicalReadStatic()
610 rc_t VPhysicalReadBlob ( VPhysical *self, VBlob **vblob, int64_t id, uint32_t elem_bits ) in VPhysicalReadBlob()
672 uint32_t elem_bits; in VPhysicalProdRead() local
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| H A D | column-cmn.c | 215 …uint32_t *elem_bits, const void **base, uint32_t *boff, uint32_t *row_len, uint32_t *repeat_count ) in VColumnReadCachedBlob()
229 …uint32_t *elem_bits, const void **base, uint32_t *boff, uint32_t *row_len, uint32_t * repeat_count… in VColumnReadBlob()
262 uint32_t *elem_bits, const void **base, uint32_t *boff, uint32_t *row_len, in VColumnRead()
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| H A D | phys.c | 64 rc_t VPhysicalRead ( VPhysical *self, VBlob **vblob, int64_t id, uint32_t cnt, uint32_t elem_bits ) in VPhysicalRead()
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| H A D | cursor-cmn.c | 75 LIB_EXPORT rc_t CC VCursorWrite ( VCursor *self, uint32_t col_idx, bitsz_t elem_bits, const void *b… in VCursorWrite()
104 LIB_EXPORT rc_t CC VCursorRead ( const VCursor *self, uint32_t col_idx, uint32_t elem_bits, void *b… in VCursorRead()
109 uint32_t elem_bits, void *buffer, uint32_t blen, uint32_t *row_len ) in VCursorReadDirect()
114 uint32_t elem_bits, uint32_t start, void *buffer, uint32_t off, in VCursorReadBits()
120 uint32_t elem_bits, uint32_t start, void *buffer, uint32_t off, in VCursorReadBitsDirect()
126 uint32_t *elem_bits, const void **base, uint32_t *boff, uint32_t *row_len ) in VCursorCellData()
131 uint32_t *elem_bits, const void **base, uint32_t *boff, uint32_t *row_len ) in VCursorCellDataDirect()
140 bitsz_t elem_bits, const void *buffer, bitsz_t boff, uint64_t row_len ) in VCursorDefault()
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/ |
| H A D | buff-writer.c | 105 uint32_t elem_bits; /* number of bits of each element */ member
265 uint32_t elem_bits, const void *data, uint32_t boff, uint32_t row_len ) in BufferedPairColWriterWriteMapped()
443 uint32_t elem_bits, const void *data, uint32_t boff, uint32_t row_len ) in BufferedPairColWriterWriteUnmapped()
673 uint32_t elem_bits, const void *data, uint32_t boff, uint32_t row_len, uint64_t count ) in BufferedPairColWriterWriteStatic()
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| H A D | capture-first-half-aligned.c | 89 uint32_t elem_bits, const void *data, uint32_t boff, uint32_t row_len ) in CaptureFirstHalfAlignedColWriterWrite()
117 uint32_t elem_bits, const void *data, uint32_t boff, uint32_t row_len, uint64_t count ) in CaptureFirstHalfAlignedColWriterWriteStatic()
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| H A D | col-pair.c | 134 int64_t row_id, uint32_t *elem_bits, uint32_t *boff, uint32_t *row_len ) in SimpleColumnReaderRead()
347 uint32_t elem_bits, const void *data, uint32_t boff, uint32_t row_len ) in SimpleColumnWriterWrite()
376 uint32_t elem_bits, const void *data, uint32_t boff, uint32_t row_len, uint64_t count ) in SimpleColumnWriterWriteStatic()
779 uint32_t elem_bits, boff, row_len; in ColumnPairCopy() local
803 uint32_t elem_bits, boff, row_len; in ColumnPairCopyStatic() local
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/ |
| H A D | columns.h | 40 uint32_t elem_bits; member
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/ |
| H A D | cmn_iter.c | 503 uint32_t elem_bits, boff, row_len; in cmn_read_uint64() local
534 uint32_t elem_bits, boff, row_len; in cmn_read_uint64_array() local
568 uint32_t elem_bits, boff, row_len; in cmn_read_uint32() local
598 uint32_t elem_bits, boff, row_len; in cmn_read_uint32_array() local
623 uint32_t elem_bits, boff, row_len; in cmn_read_uint8_array() local
647 uint32_t elem_bits, boff; in cmn_read_String() local
721 uint32_t elem_bits, boff, row_len; in cmn_get_db_platform() local
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| /dports/biology/sra-tools/sra-tools-2.11.0/test/samline/ |
| H A D | refbases.c | 44 uint32_t elem_bits, boff, row_len; in read_uint32() local
55 uint32_t elem_bits, boff, row_len, res = 0; in read_buffer() local
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