| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | genome_sites.c | 24717 int startdiscard, enddiscard; in Genome_print_blocks() local
24840 #define clear_end(diff,enddiscard) (diff & ~(~0U << (enddiscard))) argument
24843 #define clear_end_mask(enddiscard) (~(~0U << (enddiscard))) argument
24992 int startdiscard, enddiscard; in splicesite_positions() local
25330 int startdiscard, enddiscard; in splicesite_positions_novel() local
25520 int startdiscard, enddiscard; in prev_dinucleotide_position() local
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| H A D | genome.c | 8706 int startdiscard, enddiscard, i; in uncompress_fileio() local
8806 int startdiscard, enddiscard, i; in ntcounts_fileio() local
8933 int startdiscard, enddiscard, i; in uncompress_mmap_bitbybit() local
9048 int startdiscard, enddiscard; in Genome_uncompress_mmap() local
9167 int startdiscard, enddiscard; in Genome_uncompress_memory() local
9288 int startdiscard, enddiscard, i, k, k1; in uncompress_mmap_snps_subst() local
9667 int startdiscard, enddiscard, i; in Genome_ntcounts_mmap() local
10021 int startdiscard, enddiscard, i; in uncompress_mmap_nucleotides() local
10151 int startdiscard, enddiscard, i; in uncompress_mmap_int_string() local
10330 int startdiscard, enddiscard, i; in uncompress_mmap_int_string_convert() local
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| H A D | knownsplicing.c | 47 #define clear_end(diff,enddiscard) (diff & ~(~0U << (enddiscard))) argument
64 int startdiscard, enddiscard; in Knownsplicing_splicesite_p() local
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| H A D | genome128_hr.c | 3973 set_end_128 (__m128i _diff, int enddiscard) { in set_end_128()
4655 int startdiscard, enddiscard; in Genome_count_mismatches_substring_ref() local
4830 int startdiscard, enddiscard; in count_mismatches_substring_snps() local
5166 int startdiscard, enddiscard; in mismatches_left() local
5429 int startdiscard, enddiscard; in mismatches_left_alt() local
5756 int startdiscard, enddiscard; in mismatches_right() local
6019 int startdiscard, enddiscard; in mismatches_right_alt() local
6341 int startdiscard, enddiscard; in Genome_first_kmer_left() local
6673 int startdiscard, enddiscard; in Genome_first_kmer_right() local
7005 int startdiscard, enddiscard; in Genome_mark_mismatches_ref() local
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| H A D | oligoindex_hr.c | 9111 int startdiscard, int enddiscard) { in store_9mers_fwd_partial()
9215 int startdiscard, int enddiscard) { in store_8mers_fwd_partial()
9319 int startdiscard, int enddiscard) { in store_7mers_fwd_partial()
19259 int startdiscard, enddiscard; in count_positions_fwd_std() local
19747 int startdiscard, enddiscard; in count_positions_fwd_simd() local
20425 int startdiscard, enddiscard; in store_positions_fwd_std() local
20709 int startdiscard, enddiscard; in store_positions_fwd_simd() local
30759 int startdiscard, enddiscard; in count_positions_rev_std() local
31237 int startdiscard, enddiscard; in count_positions_rev_simd() local
31739 int startdiscard, enddiscard; in store_positions_rev_std() local
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| H A D | compress-write.c | 349 unsigned int startdiscard, enddiscard, i; in Compress_update_file() local
443 unsigned int startdiscard, enddiscard, i; in Compress_update_memory() local
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| H A D | genome128_consec.c | 3011 clear_end_128 (__m128i _diff, int enddiscard) { in clear_end_128()
3187 #define clear_end_32(diff,enddiscard) (diff & ~(~0U << (enddiscard))) argument
3191 #define set_end_32(diff,enddiscard) (diff | (~0U << enddiscard)) argument
3195 #define clear_end_mask(enddiscard) (~(~0U << (enddiscard))) argument
3246 int startdiscard, enddiscard; in Genome_consecutive_matches_rightward() local
3512 int startdiscard, enddiscard; in Genome_consecutive_matches_leftward() local
3787 int startdiscard, enddiscard, nblocks; in Genome_consecutive_matches_pair() local
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| H A D | splicetrie.c | 54 #define clear_end(diff,enddiscard) (diff & ~(~0U << (enddiscard))) argument
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| H A D | maxent_hr.c | 24723 int startdiscard, enddiscard; in Genome_print_blocks() local
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