| /dports/biology/py-orange3-bioinformatics/Orange3-Bioinformatics-4.3.1/doc/scripting_references/code/go/ |
| H A D | gene_annotations.py | 9 genes = {'RRB1': '855161', 'OST4': '851366', 'VID27': '855509'} variable
22 genes = set([a.gene_id for a in ants]) variable
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| /dports/biology/py-resdk/resdk-13.8.0/src/resdk/resources/ |
| H A D | geneset.py | 20 def __init__(self, resolwe, genes=None, source=None, species=None, **model_data): argument
35 def genes(self): member in Geneset
49 def genes(self, genes): member in Geneset
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| /dports/biology/prodigal/Prodigal-2.6.3-7-ga78ed3f/ |
| H A D | gene.c | 75 void tweak_final_starts(struct _gene *genes, int ng, struct _node *nod, in tweak_final_starts()
196 void record_gene_data(struct _gene *genes, int ng, struct _node *nod, in record_gene_data()
339 void print_genes(FILE *fp, struct _gene *genes, int ng, struct _node *nod, in print_genes()
448 void write_translations(FILE *fh, struct _gene *genes, int ng, struct in write_translations()
484 void write_nucleotide_seqs(FILE *fh, struct _gene *genes, int ng, struct in write_nucleotide_seqs()
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| /dports/biology/bbmap/bbmap/current/driver/ |
| H A D | MeasureGene.java | 30 Gene[] genes=Data.getGenes(chrom, Shared.PLUS); in main() local
117 public static Gene[] toNormalGenes(Gene[] genes){ in toNormalGenes()
126 public static ArrayList<Exon> getExons(Gene...genes){ in getExons()
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| H A D | CountRNAs.java | 15 Gene[] genes=Data.getGenes(chrom); in main() local
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| H A D | Search.java | 13 public static List<Gene> findGenes(int p, Gene[] genes){ in findGenes()
60 public static List<Gene> findGenesLinear(int p, Gene[] genes, Range[] ranges){ in findGenesLinear()
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| H A D | FindMotifs.java | 147 GeneSet[] genes=Data.getGeneSets(chrom); in analyzeChromosomeGStarts() local
181 GeneSet[] genes=Data.getGeneSets(chrom); in analyzeChromosomeGStartsStronger() local
229 GeneSet[] genes=Data.getGeneSets(chrom); in analyzeChromosomeGStartsStrongerInFrame() local
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| /dports/math/p5-AI-Genetic/AI-Genetic-0.05/Genetic/ |
| H A D | IndBitVector.pm | 38 sub genes { subroutine
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| H A D | IndListVector.pm | 39 sub genes { subroutine
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| H A D | IndRangeVector.pm | 42 sub genes { subroutine
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| H A D | Individual.pm | 52 sub genes {} subroutine
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| /dports/biology/py-orange3-bioinformatics/Orange3-Bioinformatics-4.3.1/orangecontrib/bioinformatics/dicty/ |
| H A D | phenotypes.py | 65 def genes(self): member in DictyMutants
98 def genes(): function
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| /dports/lang/solidity/solidity_0.8.11/tools/yulPhaser/ |
| H A D | Chromosome.h | 54 std::string const& genes() const { return m_genes; } in genes() function
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| H A D | Mutations.cpp | 39 string genes; in geneRandomisation() local
55 string genes; in geneDeletion() local
68 string genes; in geneAddition() local
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| H A D | Chromosome.cpp | 77 string genes; in stepsToGenes() local
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| /dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/ |
| H A D | ensgene.c | 4148 AjPList genes) in geneadaptorFetchAllbyStatement()
4746 AjPList genes) in ensGeneadaptorFetchAll()
4799 AjPList genes) in ensGeneadaptorFetchAllbyBiotype()
4866 AjPList genes) in ensGeneadaptorFetchAllbyDisplaylabel()
4932 AjPList genes) in ensGeneadaptorFetchAllbyExternaldatabasename()
4995 AjPList genes) in ensGeneadaptorFetchAllbyExternalname()
5057 AjPTable genes) in ensGeneadaptorFetchAllbyIdentifiers()
5098 AjPList genes) in ensGeneadaptorFetchAllbySlice()
5422 AjPList genes) in ensGeneadaptorFetchAllbyStableidentifier()
5493 AjPList genes = NULL; in ensGeneadaptorFetchByDisplaylabel() local
[all …]
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| /dports/biology/py-orange3-bioinformatics/Orange3-Bioinformatics-4.3.1/orangecontrib/bioinformatics/kegg/ |
| H A D | __init__.py | 109 def genes(self): member in Organism
180 def enzymes(self, genes=None): argument
183 … def get_enriched_pathways(self, genes, reference=None, prob=statistics.Binomial(), callback=None): argument
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/discrepancy/ |
| H A D | overlapping_features.cpp | 333 const auto& genes = context.FeatGenes(); variable
357 const auto& genes = context.FeatGenes(); variable
391 const auto& genes = context.FeatGenes(); variable
496 const auto& genes = context.FeatGenes(); variable
580 const auto& genes = context.FeatGenes(); variable
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| /dports/biology/cufflinks/cufflinks-2.2.1-89-gdc3b0cb/src/ |
| H A D | tracking.cpp | 17 set<string> genes = ab.gene_name(); in add_to_tracking_table() local
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| /dports/biology/checkm/CheckM-1.0.18/checkm/util/ |
| H A D | pfam.py | 149 def genesInSameClan(self, genes): argument
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| /dports/biology/py-orange3-bioinformatics/Orange3-Bioinformatics-4.3.1/orangecontrib/bioinformatics/geneset/ |
| H A D | utils.py | 59 …def __init__(self, gs_id=None, hierarchy=None, organism=None, name=None, genes=None, description=N… argument
206 def genes(self): member in GeneSets
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| /dports/biology/py-xenaPython/xenaPython-1.0.14/xenaPython/ |
| H A D | example.py | 16 genes =["TP53", "RB1", "PIK3CA"] variable
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| /dports/biology/py-orange3-bioinformatics/Orange3-Bioinformatics-4.3.1/orangecontrib/bioinformatics/ncbi/homologene/ |
| H A D | __init__.py | 53 genes = Orange.data.Table("brown-selected") variable
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| /dports/biology/py-orange3-bioinformatics/Orange3-Bioinformatics-4.3.1/orangecontrib/bioinformatics/go/ |
| H A D | __init__.py | 564 def get_genes_with_known_annotation(self, genes): argument
623 def genes(self): member in Annotations
628 genes, argument
735 …def get_annotated_terms(self, genes, direct_annotation_only=False, evidence_codes=None, progress_c… argument
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| /dports/biology/py-orange3-bioinformatics/Orange3-Bioinformatics-4.3.1/orangecontrib/bioinformatics/ncbi/gene/ |
| H A D | __init__.py | 88 def genes(self) -> List[Gene]: member in GeneMatcher
92 def genes(self, genes: List[str]) -> None: member in GeneMatcher
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