| /dports/biology/vcflib/vcflib-1.0.2/src/ |
| H A D | var.cpp | 130 double gt::unphred(map< string, vector<string> > & geno, int index){ in unphred()
134 double gl::unphred(map< string, vector<string> > & geno, int index){ in unphred()
140 double gp::unphred(map< string, vector<string> > & geno, int index){ in unphred()
146 double pl::unphred(map< string, vector<string> > & geno, int index){ in unphred()
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| /dports/biology/freebayes/freebayes-1.3.5/vcflib-temp/src/ |
| H A D | var.cpp | 112 double gt::unphred(map< string, vector<string> > & geno, int index){ in unphred()
116 double gl::unphred(map< string, vector<string> > & geno, int index){ in unphred()
122 double gp::unphred(map< string, vector<string> > & geno, int index){ in unphred()
128 double pl::unphred(map< string, vector<string> > & geno, int index){ in unphred()
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| /dports/biology/freebayes/freebayes-1.3.5/vcflib/src/ |
| H A D | var.cpp | 112 double gt::unphred(map< string, vector<string> > & geno, int index){ in unphred()
116 double gl::unphred(map< string, vector<string> > & geno, int index){ in unphred()
122 double gp::unphred(map< string, vector<string> > & geno, int index){ in unphred()
128 double pl::unphred(map< string, vector<string> > & geno, int index){ in unphred()
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| /dports/biology/mapm3/mapm3-3.0_1/quant/ |
| H A D | qdata.c | 142 int geno, num; local
283 GENOTYPE geno, k; local
400 int j, k, geno, qtl, left, right; local
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| H A D | qlow.h | 30 #define for_locus_genotypes(data_type,geno) \ argument
44 #define for_interval_genotypes(data_type,geno) \ argument
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| /dports/biology/gemma/GEMMA-0.98.3/src/ |
| H A D | varcov.cpp | 266 gsl_vector *geno = gsl_vector_alloc(ni_test); in AnalyzeBimbam() local
366 gsl_vector *geno = gsl_vector_alloc(ni_test); in AnalyzePlink() local
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| H A D | prdt.cpp | 220 double geno, x_mean, x_train_mean, effect_size; in AnalyzeBimbam() local
324 double geno, x_mean, x_train_mean, effect_size; in AnalyzePlink() local
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| H A D | gemma_io.cpp | 681 double maf, geno, geno_old; in ReadFile_geno() local
888 double v_x, v_w, geno; in ReadFile_bed() local
1104 ifstream &infile, gsl_vector *geno, double &geno_mean) { in Plink_ReadOneSNP()
1417 gsl_vector *geno = gsl_vector_safe_alloc(ni_total); in BimbamKin() local
1599 gsl_vector *geno = gsl_vector_safe_alloc(ni_total); in PlinkKin() local
1744 double geno, geno_mean; in ReadFile_geno() local
1856 double geno, geno_mean; in ReadFile_geno() local
1976 double geno, geno_mean; in ReadFile_bed() local
2112 double geno, geno_mean; in ReadFile_bed() local
2759 gsl_vector *geno = gsl_vector_safe_alloc(ni_test); in BimbamKinUncentered() local
[all …]
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| H A D | lm.cpp | 397 double geno, x_mean; in AnalyzeBimbam() local
513 double geno, x_mean; in AnalyzePlink() local
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| /dports/biology/bamutil/bamUtil-1.0.15/libStatGen/general/ |
| H A D | PedigreeAlleles.h | 135 void Intersect(Alleles & geno) in Intersect()
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| /dports/biology/vt/vt-0.57721/ |
| H A D | profile_chm1.cpp | 79 int32_t geno[4][4]; member in __anonee2a309b0111::ConcordanceStats
609 int32_t (&geno)[4][4] = concordance[i].geno; in print_stats() local
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| H A D | profile_na12878.cpp | 84 int32_t geno[4][4]; member in __anon2565e3eb0111::ConcordanceStats
908 int32_t (&geno)[4][4] = concordance[i].geno; in print_stats() local
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| /dports/games/nethack36/NetHack-NetHack-3.6.6_Released/include/ |
| H A D | permonst.h | 50 unsigned short geno; /* creation/geno mask value */ member
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| /dports/games/nethack36-nox11/NetHack-NetHack-3.6.6_Released/include/ |
| H A D | permonst.h | 50 unsigned short geno; /* creation/geno mask value */ member
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| /dports/games/nethack33-nox11/nethack-3.3.1/include/ |
| H A D | permonst.h | 49 unsigned short geno; /* creation/geno mask value */ member
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| /dports/games/nethack34-nox11/nethack-3.4.3/include/ |
| H A D | permonst.h | 49 unsigned short geno; /* creation/geno mask value */ member
|
| /dports/games/nethack34/nethack-3.4.3/include/ |
| H A D | permonst.h | 49 unsigned short geno; /* creation/geno mask value */ member
|
| /dports/games/nethack33/nethack-3.3.1/include/ |
| H A D | permonst.h | 49 unsigned short geno; /* creation/geno mask value */ member
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| /dports/games/falconseye/falconseye-1.9.3_11/include/ |
| H A D | permonst.h | 49 unsigned short geno; /* creation/geno mask value */ member
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| /dports/games/vultures-eye/vulture-2.3.67/nethack/include/ |
| H A D | permonst.h | 49 unsigned short geno; /* creation/geno mask value */ member
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| /dports/games/vultures-eye/vulture-2.3.67/slashem/include/ |
| H A D | permonst.h | 49 unsigned short geno; /* creation/geno mask value */ member
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| /dports/games/unnethack/unnethack-5.1.0-20131208/include/ |
| H A D | permonst.h | 50 unsigned short geno; /* creation/geno mask value */ member
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| /dports/games/vultures-eye/vulture-2.3.67/unnethack/include/ |
| H A D | permonst.h | 49 unsigned short geno; /* creation/geno mask value */ member
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| /dports/games/xnethack/xNetHack-xnh6.1/include/ |
| H A D | permonst.h | 50 unsigned short geno; /* creation/geno mask value */ member
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| /dports/biology/vcftools/vcftools-0.1.16/src/cpp/ |
| H A D | variant_file_output.cpp | 465 pair<int, int> geno; in output_indv_burden() local
591 pair<int, int> geno; in output_indv_freq_burden() local
1222 pair<int, int> geno; in output_haplotype_count() local
1434 pair<int, int> geno; in output_haplotype_r2() local
1615 pair<int, int> geno; in output_genotype_r2() local
1787 pair<int,int> geno; in output_genotype_chisq() local
1954 pair<int,int> geno; in output_interchromosomal_genotype_r2() local
2108 pair<int, int> geno; in output_interchromosomal_haplotype_r2() local
2258 pair<int, int> geno; in output_haplotype_r2_of_SNP_list_vs_all_others() local
2501 pair<int,int> geno; in output_genotype_r2_of_SNP_list_vs_all_others() local
[all …]
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