| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/smithwaterman/ |
| H A D | SmithWatermanAlignment.java | 6 Cigar getCigar(); in getCigar() method
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| H A D | SWNativeAlignerWrapper.java | 85 public Cigar getCigar() { in getCigar() method in SWNativeAlignerWrapper.SWNativeResultWrapper
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| H A D | SmithWatermanJavaAligner.java | 243 public Cigar getCigar() { in getCigar() method in SmithWatermanJavaAligner.SWPairwiseAlignmentResult
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/read/ |
| H A D | CigarBuilder.java | 209 public Cigar getCigar() { in getCigar() method in CigarBuilder.Result
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| H A D | SAMRecordToGATKReadAdapter.java | 329 public Cigar getCigar() { in getCigar() method in SAMRecordToGATKReadAdapter
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| /dports/biology/ugene/ugene-40.1/src/plugins/dbi_bam/src/ |
| H A D | Alignment.cpp | 103 const QList<Alignment::CigarOperation> &Alignment::getCigar() const { in getCigar() function in U2::BAM::Alignment
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/haplotype/ |
| H A D | Haplotype.java | 187 public Cigar getCigar() { in getCigar() method in Haplotype
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/utils/ |
| H A D | SVFastqUtils.java | 144 public Cigar getCigar() { in getCigar() method in SVFastqUtils.Mapping
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| /dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-bam/ |
| H A D | ngs-bam.cpp | 97 virtual ngs_adapt::StringItf *getCigar(bool const clipped, char const OPCODE[]) const { in getCigar() function in ReadCollection::AlignmentNone
603 ngs_adapt::StringItf *ReadCollection::Alignment::getCigar(bool const clipped, char const OPCODE[]) … in getCigar() function in ReadCollection::Alignment
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| /dports/biology/ncbi-vdb/ngs-2.11.0/ngs-bam/ |
| H A D | ngs-bam.cpp | 97 virtual ngs_adapt::StringItf *getCigar(bool const clipped, char const OPCODE[]) const { in getCigar() function in ReadCollection::AlignmentNone
603 ngs_adapt::StringItf *ReadCollection::Alignment::getCigar(bool const clipped, char const OPCODE[]) … in getCigar() function in ReadCollection::Alignment
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| /dports/biology/ngs-sdk/ngs-2.11.1/ngs-bam/ |
| H A D | ngs-bam.cpp | 97 virtual ngs_adapt::StringItf *getCigar(bool const clipped, char const OPCODE[]) const { in getCigar() function in ReadCollection::AlignmentNone
603 ngs_adapt::StringItf *ReadCollection::Alignment::getCigar(bool const clipped, char const OPCODE[]) … in getCigar() function in ReadCollection::Alignment
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/pathseq/ |
| H A D | PSScorer.java | 476 public Cigar getCigar() { in getCigar() method in PSPathogenHitAlignment
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/loader/ |
| H A D | common-reader-priv.h | 228 …rc_t ( * getCigar ) ( const CGDATA_IMPL* self, uint32_t *cigar, uint32_t cig_max, uint32_t… member
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/ |
| H A D | common-reader-priv.h | 228 …rc_t ( * getCigar ) ( const CGDATA_IMPL* self, uint32_t *cigar, uint32_t cig_max, uint32_t… member
|
| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/interfaces/loader/ |
| H A D | common-reader-priv.h | 228 …rc_t ( * getCigar ) ( const CGDATA_IMPL* self, uint32_t *cigar, uint32_t cig_max, uint32_t… member
|
| /dports/biology/jalview/jalview/src/jalview/xml/binding/sifts/ |
| H A D | Alignment.java | 1082 public String getCigar() { in getCigar() method in Alignment.Block.Segment
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/dragstr/ |
| H A D | CalibrateDragstrModel.java | 913 public Iterable<? extends CigarElement> getCigar() { in getCigar() method in EquivalentReadSet
|
| /dports/biology/bamutil/bamUtil-1.0.15/libStatGen/bam/ |
| H A D | SamRecord.cpp | 1555 const char* SamRecord::getCigar() in getCigar() function in SamRecord
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/evidence/ |
| H A D | BreakpointEvidence.java | 702 public String getCigar() { in getCigar() method in BreakpointEvidence.SplitRead.SAMapping
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| /dports/www/moodle311/moodle/lib/google/src/Google/Service/ |
| H A D | Genomics.php | 2018 public function getCigar() function in Google_Service_Genomics_LinearAlignment
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| /dports/www/moodle310/moodle/lib/google/src/Google/Service/ |
| H A D | Genomics.php | 2018 public function getCigar() function in Google_Service_Genomics_LinearAlignment
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| /dports/www/moodle39/moodle/lib/google/src/Google/Service/ |
| H A D | Genomics.php | 2018 public function getCigar() function in Google_Service_Genomics_LinearAlignment
|
| /dports/www/orangehrm/orangehrm-4.9/symfony/plugins/orangehrmOpenidAuthenticationPlugin/lib/vendor/GoogleAPIClient/Service/ |
| H A D | Genomics.php | 2441 public function getCigar() function in Google_Service_Genomics_LinearAlignment
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