| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/copynumber/formats/records/ |
| H A D | LinearCopyRatio.java | 25 public String getContig() { in getContig() method in LinearCopyRatio
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| H A D | AnnotatedInterval.java | 24 public String getContig() { in getContig() method in AnnotatedInterval
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| H A D | SimpleCount.java | 26 public String getContig() { return interval.getContig(); } in getContig() method in SimpleCount
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| H A D | CopyRatio.java | 20 public String getContig() { in getContig() method in CopyRatio
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| H A D | IntervalCopyNumberGenotypingData.java | 43 public String getContig() { in getContig() method in IntervalCopyNumberGenotypingData
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| H A D | AlleleFractionSegment.java | 31 public String getContig() { in getContig() method in AlleleFractionSegment
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| H A D | CopyRatioSegment.java | 35 public String getContig() { in getContig() method in CopyRatioSegment
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| H A D | LegacySegment.java | 32 public String getContig() { in getContig() method in LegacySegment
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/variant/ |
| H A D | VariantContextVariantAdapter.java | 26 public String getContig() { return variantContext.getContig(); } in getContig() method in VariantContextVariantAdapter
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| H A D | MinimalVariant.java | 45 public String getContig() { return interval.getContig(); } in getContig() method in MinimalVariant
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/utils/ |
| H A D | SVLocation.java | 12 public int getContig() { return contig; } in getContig() method in SVLocation
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/engine/ |
| H A D | ReferenceShard.java | 46 public String getContig() { in getContig() method in ReferenceShard
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| H A D | VariantShard.java | 44 public String getContig() { in getContig() method in VariantShard
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| H A D | Shard.java | 50 default String getContig() { in getContig() method
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| H A D | ShardBoundary.java | 40 public String getContig() { in getContig() method in ShardBoundary
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/sv/ |
| H A D | BafEvidence.java | 29 public String getContig() { in getContig() method in BafEvidence
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| H A D | DepthEvidence.java | 26 public String getContig() { in getContig() method in DepthEvidence
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| H A D | SplitReadEvidence.java | 31 public String getContig() { in getContig() method in SplitReadEvidence
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/consensus/ |
| H A D | ReadsWithSameUMI.java | 93 public String getContig() { in getContig() method in ReadsWithSameUMI
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/read/ |
| H A D | Fragment.java | 72 public String getContig() { in getContig() method in Fragment
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/activityprofile/ |
| H A D | ActivityProfileStateRange.java | 50 public String getContig() { in getContig() method in ActivityProfileStateRange
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/codecs/table/ |
| H A D | TableFeature.java | 40 public String getContig() { in getContig() method in TableFeature
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/codecs/sampileup/ |
| H A D | SAMPileupFeature.java | 46 public String getContig() { in getContig() method in SAMPileupFeature
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/copynumber/utils/annotatedinterval/ |
| H A D | AnnotatedInterval.java | 29 public String getContig() { in getContig() method in AnnotatedInterval
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/locusiterator/ |
| H A D | AlignmentStateMachine.java | 80 public String getContig() { in getContig() method in AlignmentStateMachine
|