| /dports/textproc/py-petl/petl-1.7.4/petl/transform/ |
| H A D | intervals.py | 112 include_stop=False): argument
190 def _search_tree(tree, start, stop, include_stop): argument
212 def __init__(self, tree, include_stop=False): argument
224 include_stop=False, strict=True): argument
305 include_stop=False, strict=True): argument
320 value=None, include_stop=False): argument
390 include_stop=False): argument
705 missing=None, include_stop=False): argument
832 include_stop=False): argument
881 include_stop=False): argument
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/ |
| H A D | promote.cpp | 222 bool include_stop = (m_Flags & fPromote_IncludeStop) != 0; in x_PromoteCdregion() local
636 bool include_stop, bool remove_trailingX) in PromoteCdregion()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/ |
| H A D | promote.cpp | 222 bool include_stop = (m_Flags & fPromote_IncludeStop) != 0; in x_PromoteCdregion() local
636 bool include_stop, bool remove_trailingX) in PromoteCdregion()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/ |
| H A D | sequence.cpp | 3496 bool include_stop, in x_Translate()
3951 bool include_stop, in Translate()
3979 bool include_stop, in Translate()
4008 bool include_stop, in Translate()
4025 bool include_stop, in Translate()
4040 bool include_stop, in Translate()
4242 bool include_stop, in TranslateCdregion()
4259 bool include_stop, in TranslateCdregion()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/ |
| H A D | sequence.cpp | 3496 bool include_stop, in x_Translate()
3951 bool include_stop, in Translate()
3979 bool include_stop, in Translate()
4008 bool include_stop, in Translate()
4025 bool include_stop, in Translate()
4040 bool include_stop, in Translate()
4242 bool include_stop, in TranslateCdregion()
4259 bool include_stop, in TranslateCdregion()
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| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | salprop.c | 502 Uint1 frame, Boolean include_stop, Boolean exon, in CheckPartialInterval()
677 Boolean include_stop = TRUE, in ApplyBioFeatToSeqEntry() local
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| H A D | seqport.c | 3489 NLM_EXTERN ByteStorePtr ProteinFromCdRegionExEx (SeqFeatPtr sfp, Boolean include_stop, Boolean remo… in ProteinFromCdRegionExEx()
3545 NLM_EXTERN ByteStorePtr ProteinFromCdRegionEx (SeqFeatPtr sfp, Boolean include_stop, Boolean remove… in ProteinFromCdRegionEx()
3554 Boolean include_stop, in ProteinFromCdRegionExWithTrailingCodonHandling()
3626 NLM_EXTERN ByteStorePtr ProteinFromCdRegion(SeqFeatPtr sfp, Boolean include_stop) in ProteinFromCdRegion()
6393 Boolean include_stop, in TransTableTranslateCommon()
6661 Boolean include_stop, in TransTableTranslateSeqLoc()
6674 Boolean include_stop, in TransTableTranslateCdRegionEx()
6713 Boolean include_stop, in TransTableTranslateCdRegion()
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| H A D | salstruc.c | 532 NLM_EXTERN ByteStorePtr cds_to_pept (SeqLocPtr slp, Uint1 frame, Int2 gencode, Boolean include_stop) in cds_to_pept()
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| H A D | sqnutil1.c | 2139 Boolean include_stop, in PromoteXrefsExEx()
2851 NLM_EXTERN void PromoteXrefsEx (SeqFeatPtr sfp, BioseqPtr bsp, Uint2 entityID, Boolean include_stop, in PromoteXrefsEx()
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| H A D | sqnutil3.c | 24318 Boolean include_stop, in RetranslateOneCDS()
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| /dports/biology/ncbi-toolkit/ncbi/sequin/ |
| H A D | sequin.h | 1414 Boolean include_stop; member
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| H A D | sequin8.c | 816 Boolean include_stop, in RetranslateCdRegionsEx()
850 Boolean include_stop, in RetranslateCdRegions()
|